Locus 545

Sequence ID 3R_DroMel_CAF1
Location 2,037,150 – 2,037,241
Length 91
Max. P 0.804414
window868

overview

Window 8

Location 2,037,150 – 2,037,241
Length 91
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 78.22
Mean single sequence MFE -31.92
Consensus MFE -22.20
Energy contribution -20.99
Covariance contribution -1.22
Combinations/Pair 1.29
Mean z-score -1.44
Structure conservation index 0.70
SVM decision value 0.63
SVM RNA-class probability 0.804414
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2037150 91 + 27905053
UUU-AAGUCAUUUCAUCUUCUCCUGCUUACAGCCAUGGCAAUGAGAGCGCUCAUCUUUCUGGCCCUCGCCA---------------CUCUGGUGGCUGGCGAAGGUC
...-..........((((((.((........((((..(..(((((....)))))..)..))))....((((---------------(....))))).)).)))))). ( -27.30)
>DroPse_CAF1 158786 104 + 1
UCUUAAACUGU---GUCUUCUCCUGCUUUCAGCCAUGGCAAUGAGAGCUCUCGCCUUGCUGGCCAUAGUCGGCGCAGUCGGCAUGGGCCUGGUGGCCGGCGAAGGUC
...........---..........(((((((((....))..)))))))....((((((((((((((....(((.((.......)).)))..))))))))).))))). ( -41.00)
>DroSec_CAF1 180297 91 + 1
UUU-AAGCCAUUUCAUCUUCUCCUGCUUACAGCCAUGGCAAUGAGAGCGCUCAUCUUUCUGGCCCUCGCCA---------------CUCUGGUGGCCGGCGAAGGUC
...-..........((((((.((........((((..(..(((((....)))))..)..))))....((((---------------(....))))).)).)))))). ( -27.20)
>DroSim_CAF1 185232 91 + 1
UUU-AAGCCAUUUCAUCUUCUCCUGCUUACAGCCAUGGCAAUGAGAGCGCUCAUCUUUCUGGCCCUCGCCA---------------CUCUGGUGGCCGGCGAAGGUC
...-..........((((((.((........((((..(..(((((....)))))..)..))))....((((---------------(....))))).)).)))))). ( -27.20)
>DroEre_CAF1 180407 91 + 1
UCU-AAGCUGUUUCACCUUCUCCUGCUUUCAGCCAUGGCAAUGCGAGCACUCAUCUAUCUGGCCCUCGCUA---------------CUCUGGCGGCCGGCGAAGGUC
...-..........((((((.((.(((....((((.((....(((((..(.((......)))..)))))..---------------)).))))))).)).)))))). ( -27.80)
>DroPer_CAF1 160393 104 + 1
UCUAAAACUGU---GUCUUCUCCUGCUUUCAGCCAUGGCAAUGAGAGCUAUCGCCUUGCUGGCCAUAGUCGGCGCAGUCGGCAUGGGCCUGGUGGCCGGCGAAGGUC
...........---..........(((((((((....))..)))))))....((((((((((((((....(((.((.......)).)))..))))))))).))))). ( -41.00)
>consensus
UCU_AAGCCAUUUCAUCUUCUCCUGCUUACAGCCAUGGCAAUGAGAGCGCUCAUCUUUCUGGCCCUCGCCA_______________CUCUGGUGGCCGGCGAAGGUC
..............((((((.((.((((.((((....))..)).))))............((((...((((..................)))))))))).)))))). (-22.20 = -20.99 +  -1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:42 2006