Locus 5448

Sequence ID 3R_DroMel_CAF1
Location 14,378,596 – 14,378,691
Length 95
Max. P 0.778681
window8863

overview

Window 3

Location 14,378,596 – 14,378,691
Length 95
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 84.87
Mean single sequence MFE -22.27
Consensus MFE -20.34
Energy contribution -20.34
Covariance contribution -0.00
Combinations/Pair 1.10
Mean z-score -1.60
Structure conservation index 0.91
SVM decision value 0.55
SVM RNA-class probability 0.778681
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14378596 95 - 27905053
UGCUUCAGCCGGCGAAAUUUCCGCAAUUUAUGUGGCAAGCUCGCCGCGAAAAGACAUCCCCCCCCCCCCCCCCCCAAA-AAAGGAAGCAGCGCGAA
((((((.((.(((((..((.(((((.....))))).))..)))))))((.......))....................-....))))))....... ( -24.00)
>DroSec_CAF1 157332 81 - 1
UGCUUCAGCCGACGAAAUUUCCGCAAUUUAUGUGGCAAGCUCGCCGCGAAAAGAC--------------CCACAAAAA-AAAAGAGGCAGCGAGAA
((((((.((.((.......)).))..(((.((((((......)))))).)))...--------------.........-....))))))....... ( -18.60)
>DroSim_CAF1 151896 82 - 1
UGCUUCAGCCGGCGAAAUUUCCGCAAUUUAUGUGGCAAGCUCGCCGCGAAAAGAC--------------CCACAAAAAAAAAAGAGGCAGCGAGAA
((((((.((.(((((..((.(((((.....))))).))..)))))))(.......--------------.)............))))))....... ( -23.90)
>DroEre_CAF1 164821 77 - 1
UGCUUCAGCCGGCGAAAUUUCCGCAAUUUAUGUGGCAAGCUUGCCGCGCAAAGAC--------------CC----AAA-AAAAGAGGCAGCGAGCG
((((((.((((((((..((.(((((.....))))).))..)))))).))...(..--------------.)----...-....))))))....... ( -23.40)
>DroYak_CAF1 177159 77 - 1
UGCUUCAGCCGGCGAAAUUUCCGCAAUUUAUGUGGCAAGCUUGCCGCGAAAAGAC--------------CC----AAA-AAAAGUGGCAGCGAGGA
..((((.(((((((.......)))........))))..(((.(((((........--------------..----...-....)))))))))))). ( -21.43)
>consensus
UGCUUCAGCCGGCGAAAUUUCCGCAAUUUAUGUGGCAAGCUCGCCGCGAAAAGAC______________CC_C__AAA_AAAAGAGGCAGCGAGAA
((((((...((((((..((.(((((.....))))).))..))))))(.....)..............................))))))....... (-20.34 = -20.34 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:54 2006