Locus 5446

Sequence ID 3R_DroMel_CAF1
Location 14,371,301 – 14,371,406
Length 105
Max. P 0.840842
window8860

overview

Window 0

Location 14,371,301 – 14,371,406
Length 105
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 75.99
Mean single sequence MFE -39.93
Consensus MFE -22.64
Energy contribution -24.76
Covariance contribution 2.12
Combinations/Pair 1.26
Mean z-score -1.90
Structure conservation index 0.57
SVM decision value 0.75
SVM RNA-class probability 0.840842
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14371301 105 - 27905053
UGCUG---------CUGCUGCGUUUCGUUGGUGCUGCG---ACAGCAGAGUCGUUGCAACAAUCGCAGCUUGCACAUCCAGCAGCAGUCAGUUGGACGCGGCGGCUCCUUCAGCAAG
(((((---------(((((((((((..(((((((((((---((......)))(((((.......)))))...........)))))).))))..))))))))))))......)))).. ( -46.20)
>DroVir_CAF1 175900 94 - 1
-----------------CUGCGCUUCUUU--UGCCAGG---AUA-GUCAGUCGUUGCAACAAUCGCAUUUUGCACAUUCACUAGCAUUCAGUUGUACGCGGCUGCUCCUUCAGUAAG
-----------------(((.((......--.)))))(---(.(-(.(((((((((((((....((.....)).(........)......)))))).)))))))))...))...... ( -21.20)
>DroEre_CAF1 157259 107 - 1
-------GCUG---CUGCUGCGCCUCGCUGGUGCUGCGACGACAGCAGAGUGGUUGCAACAAUCGCAGCUUGCACAUCCAGCAGCAGUCAGUUGGACGCGGCGGCUCCUUCAGCAAG
-------((((---((((((((((..(((((((((((.......(((....((((((.......))))))))).......)))))).))))).)).)))))))))......)))... ( -46.64)
>DroWil_CAF1 180977 107 - 1
----GCUCUUGUGGGCGCUGCGCUUUC-UUGUCCU--G---GUGGUAGCGUCAUUGCAACAAUCGCAGUUUGCACAUUUACCAGCAGUCAGUUGUACGCGGCUGCUCCUUCAGUAAG
----(((...(.((((((((((..(..-(((..((--(---.((((((((..(((((.......))))).))).....))))).))).)))..)..)))))).)))))...)))... ( -33.50)
>DroYak_CAF1 158919 104 - 1
-------GCUG---CUGCUGCGUUUAGCUGGUGCUGCG---ACAGCAGAGUCGUUGCAACAAUCGCAGCUUGCACAUCCAGCAGCAGUCAGUUGGACGCGGCGGCUCCUUCAGCAAG
-------((((---((((((((((((((((((((((((---((......)))(((((.......)))))...........)))))).))))))))))))))))))......)))... ( -52.10)
>consensus
_________UG___CUGCUGCGCUUCGCUGGUGCUGCG___ACAGCAGAGUCGUUGCAACAAUCGCAGCUUGCACAUCCAGCAGCAGUCAGUUGGACGCGGCGGCUCCUUCAGCAAG
................((((((.((.(((((((((((.......((((....(((((.......))))))))).......)))))).))))).)).)))))).(((.....)))... (-22.64 = -24.76 +   2.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:51 2006