| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,367,148 – 14,367,241 |
| Length | 93 |
| Max. P | 0.997291 |
| Location | 14,367,148 – 14,367,241 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 66.60 |
| Mean single sequence MFE | -23.38 |
| Consensus MFE | -9.64 |
| Energy contribution | -10.84 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.74 |
| Structure conservation index | 0.41 |
| SVM decision value | 2.83 |
| SVM RNA-class probability | 0.997291 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14367148 93 + 27905053 CGAAAGUUAGGCUAAUCCUAGAUUAGCCAAUAAAUUGG---------CCA--AUUUCGCGAU--------GGGUAAACCAAUUACGCAAGCAACUUGG-CUUAUGAAAAUAUU (....)...((((((((...)))))))).....((.((---------(((--(.((.((..(--------(.((((.....)))).)).)))).))))-)).))......... ( -24.60) >DroSec_CAF1 145895 75 + 1 CGAAAGUUGGACUAAUCCUAGAUUAGCCAAUAAAUUGG---------CAA--C--------------------UAAACUAAUUACGCAAGCAAC------UUAUGUAAAUAU- .....(((((.((((((...))))))))))).((((((---------...--.--------------------....)))))).(....)....------............- ( -12.40) >DroSim_CAF1 140249 81 + 1 CGAAAGUUGGGCUAAUCCUAGAUUAGCCAAUAAAUUGG---------CAA--C--------------------UAAACUAAUUACGCAAGCAACUUGG-CUUAUGUAAAUAUU ....((((.((((((((...))))))))........(.---------...--)--------------------..))))..(((((.((((......)-))).)))))..... ( -19.70) >DroEre_CAF1 153395 107 + 1 CAAAAGUUGGGCUAAUCCCAGAUUAGCCAAUAAACUACGCGAUGCU-CAAAUAUUCCGCAAUGGAUAAGUGGGUAAACUAAUUAACAAAGCAACUUGGUCUUAUGACC----- ...((((((((((((((...))))))))..............((((-((..(((((......)))))..))))))...............))))))((((....))))----- ( -29.30) >DroYak_CAF1 154788 108 + 1 CGAAAGUUAGGCUAAUCCCAGAUUAGCCAAUAAACAACGCGAAGCUGCAAAUAUUCCGCAAGGGGUAAGUGGGUACACUAAAUACAAAAGCAACUUGGUCUUAUGGUC----- (....)...((((((((...))))))))..........((.(((.(((...((((((....))))))((((....))))..........))).))).)).........----- ( -30.90) >consensus CGAAAGUUGGGCUAAUCCUAGAUUAGCCAAUAAAUUGG_________CAA__AUU_CGC_A_________GGGUAAACUAAUUACGCAAGCAACUUGG_CUUAUGAAAAUAU_ ...((((((((((((((...))))))))........................................................(....)))))))................. ( -9.64 = -10.84 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:49 2006