Locus 5443

Sequence ID 3R_DroMel_CAF1
Location 14,366,489 – 14,366,587
Length 98
Max. P 0.623419
window8857

overview

Window 7

Location 14,366,489 – 14,366,587
Length 98
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.21
Mean single sequence MFE -22.34
Consensus MFE -16.33
Energy contribution -16.42
Covariance contribution 0.08
Combinations/Pair 1.05
Mean z-score -1.24
Structure conservation index 0.73
SVM decision value 0.18
SVM RNA-class probability 0.623419
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14366489 98 + 27905053
GUGUAU--ACAGUUGAGGUGUCCAAGCAAACCGAUAAAUUGGUUGGCAAUUAUAAGCCAAAUAUUUGCAUAUCUCCAAU--------------------GGUCUUAUUCCCAAUUCAAAU
......--.((...(((((((.((((..((((((....))))))(((........))).....)))).)))))))...)--------------------).................... ( -18.90)
>DroPse_CAF1 154229 120 + 1
UUGUAUCCACAGUUGAGGUGUUCGAGCAAACCGACAAAUUGGUUGGCAAUUAUAAGCCAAAUAUUUGCAUAUCUCAAGUGCAGCCACAACACAACACGAUCUUUUAUUCACAAUUCGAAU
((((..(..((.(((((((((....(((((((((....))))(((((........)))))...)))))))))))))).))..)..)))).......(((...............)))... ( -24.76)
>DroEre_CAF1 152799 98 + 1
GUGUAU--ACAGUUGAGGUGUCCAAGCAAACCGAUAAAUUGGUUGGCAAUUAUAAGCCAAAUAUUUGCAUAUCUCCAAU--------------------GGUCCUAUUCCCAAUUCAAAU
......--.((...(((((((.((((..((((((....))))))(((........))).....)))).)))))))...)--------------------).................... ( -18.90)
>DroYak_CAF1 154156 98 + 1
GUGUAU--ACAGUUGAGGUGUCCAAGCAAACCGAUAAAUUGGUUGGCAAUUAUAAGCCAAACAUUUGCAUAUCUCCCAU--------------------GGUCUUAUUCCCAAUUCAAAU
......--.((...(((((((.((((..((((((....))))))(((........))).....)))).)))))))...)--------------------).................... ( -18.90)
>DroAna_CAF1 134211 113 + 1
GUGGAU--ACAGUUGAGGUGUCCGAGCAAACCGAUAAAUUGGUUGGCAAUUAUAAACCAAAUAUUUGCAUUUCUCGAAGGCAUCAACAAUA-----UCAGCUCUUAUAUCCAAUUCAAAU
.(((((--(.((((((((((((((((..((((((....)))))).((((.(((.......))).))))....))))..)))))).......-----))))))....))))))........ ( -27.81)
>DroPer_CAF1 158334 120 + 1
UUGUAUCCACAGUUGAGGUGUUCGAGCAAACCGACAAAUUGGUUGGCAAUUAUAAGCCAAAUAUUUGCAUAUCUCAAGUGCAGCCACAACACAACACGAUCUUUUAUUCACAAUUCGAAU
((((..(..((.(((((((((....(((((((((....))))(((((........)))))...)))))))))))))).))..)..)))).......(((...............)))... ( -24.76)
>consensus
GUGUAU__ACAGUUGAGGUGUCCAAGCAAACCGAUAAAUUGGUUGGCAAUUAUAAGCCAAAUAUUUGCAUAUCUCCAAU____________________GCUCUUAUUCCCAAUUCAAAU
..............(((((((.((((..((((((....))))))(((........))).....)))).)))))))............................................. (-16.33 = -16.42 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:48 2006