Locus 5437

Sequence ID 3R_DroMel_CAF1
Location 14,348,412 – 14,348,513
Length 101
Max. P 0.741018
window8845

overview

Window 5

Location 14,348,412 – 14,348,513
Length 101
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.83
Mean single sequence MFE -25.95
Consensus MFE -17.51
Energy contribution -17.35
Covariance contribution -0.16
Combinations/Pair 1.15
Mean z-score -1.25
Structure conservation index 0.67
SVM decision value 0.45
SVM RNA-class probability 0.741018
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14348412 101 - 27905053
C--------------AUUUCGCCGCA---UGGC--AUGUGGCAACUAUUGGGAGCUGUCAAUGCAGAAGCCGCUUGACGUGUUAAUUCGCCAGCUGACACGCACAAUCCAAAACACACAC
.--------------.....((((((---(...--))))))).....(((((.((.(((((.((.......)))))))((((((..........))))))))....)))))......... ( -25.70)
>DroPse_CAF1 135315 116 - 1
CAUACCCAU--ACCCAUUCCGCCACACUGUGGC--AUGUGGCAACUAUUUGGACCUGUCAAUGCAGACCCCGCUUGACGUGUUAAUACGCAAGCUGACACACCCAUACCUACACAUACCC
.........--.........(((((...)))))--(((((.........(((....(((((.((.......)))))))((((((...(....).))))))..)))......))))).... ( -27.76)
>DroSim_CAF1 122957 101 - 1
C--------------AUUUCGCCGCA---UGGC--AUGUGGCAACUAUUGGGAGCUGUCAAUGCAGAAGCCGCUUGACGUGUUAAUUCGCCAGCUGACACGCACAAUCCAAAACACACAC
.--------------.....((((((---(...--))))))).....(((((.((.(((((.((.......)))))))((((((..........))))))))....)))))......... ( -25.70)
>DroEre_CAF1 135280 95 - 1
C--------------AUUUGGCCGCA---UGCCGCAUGUGGCAACUAUUGGAACCUGUCAAUGCAGAAGCCGCUUGACGUGUUAAUUCGCCAGCUGACACGCACAAUCCAAA--------
.--------------.....((((((---((...)))))))).....(((((....(((((.((.......)))))))((((((..........))))))......))))).-------- ( -28.60)
>DroAna_CAF1 119051 86 - 1
C--------------AUUC---CGUG---UGGC--AUGUGGUAACUAUUUGGACCUGUCAAUGCAGAAGCCGCUUGACGUGUUAAUUCGCCAGCUGACACACACACUG------------
.--------------....---.(((---((.(--(..((((.........(((.((((((.((.......)))))))).))).....))))..)).)))))......------------ ( -21.34)
>DroPer_CAF1 139467 114 - 1
CAUACCCACUAUCCCAUUCCGCCACACUGUGGC--AUGUGGCAACUAUUUGGACCUGUCAAUGCAGACCCCGCUUGACGUGUUAAUACGCAAGCUGACACACCCAUACCUA----UACCC
.............((((...(((((...)))))--..))))........(((....(((((.((.......)))))))((((((...(....).))))))..)))......----..... ( -26.60)
>consensus
C______________AUUCCGCCGCA___UGGC__AUGUGGCAACUAUUGGGACCUGUCAAUGCAGAAGCCGCUUGACGUGUUAAUUCGCCAGCUGACACACACAAUCCAAA____AC_C
....................((((((..........))))))..............(((((.((.......)))))))((((((...(....).)))))).................... (-17.51 = -17.35 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:38 2006