Locus 5433

Sequence ID 3R_DroMel_CAF1
Location 14,334,286 – 14,334,382
Length 96
Max. P 0.579804
window8840

overview

Window 0

Location 14,334,286 – 14,334,382
Length 96
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 84.31
Mean single sequence MFE -28.00
Consensus MFE -22.16
Energy contribution -22.00
Covariance contribution -0.16
Combinations/Pair 1.20
Mean z-score -1.56
Structure conservation index 0.79
SVM decision value 0.09
SVM RNA-class probability 0.579804
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14334286 96 - 27905053
----CACAUGCGUAACACUUAAGCGCCUUACCAACAACAAGUGCGUAAGUGCGUGGGGUUGCGAAUUUGGGGGUGGUGUAUUGGUGCACAGUGAAAAA---AU
----...........((((...(((((.(((((.(..(((((.(((((.(......).))))).)))))..).)))))....)))))..)))).....---.. ( -28.10)
>DroSec_CAF1 113073 87 - 1
----CACUUG---------UAAGCGCCUUACCAACAACAAGUGCGUAAGUGCGUGGGGUUGGGAAUUCGGGGGUGGUGUGUUGGUACACAGUAAAAAA---AU
----......---------....((((((.(((((..((.(..(....)..).))..))))).......)))))).(((((....)))))........---.. ( -26.40)
>DroSim_CAF1 108597 99 - 1
----CACAUGCGUAACACUUAAGCGCCUUACCAACAACAAGUGCGUAAGUGCGUGGGGUUGGGAAUUCGGGGGUGGUGUGUUGGUACACAGUAAAAAAAAAGU
----....(((.((((((....((.(((..(((((..((.(..(....)..).))..)))))......))).))...)))))))))................. ( -29.20)
>DroEre_CAF1 115870 96 - 1
AAAACACAUGCGUAACACUUAAGCGCCUUACCAACAACAAGUGCGUAAGUGCGUGGGGCUGGCAAUUUGGGGGUGGCGUGUUGGUGCACUGUGAAA-------
....((((((((((((((....((.(((..(((.(..((.(..(....)..).))..).)))......))).))...))))).))))).))))...------- ( -28.90)
>DroYak_CAF1 121168 96 - 1
----CACAUGCGUAUCACUUAAGCGCCUUGUUAACAACAAGUGCGUAAGUGCGUGGGGUUGGGAAUUUGGGGGUGGUGUAUGGGUGCACUGUAAAAAA---AA
----..(((.((((.((((...((.(((.(((..((((..(..(....)..).....))))..)))..))).)))))))))).)))............---.. ( -27.40)
>consensus
____CACAUGCGUAACACUUAAGCGCCUUACCAACAACAAGUGCGUAAGUGCGUGGGGUUGGGAAUUUGGGGGUGGUGUGUUGGUGCACAGUAAAAAA___AU
.......................((((((.(((((..((.(..(....)..).))..))))).......))))))(((((....))))).............. (-22.16 = -22.00 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:33 2006