Locus 5432

Sequence ID 3R_DroMel_CAF1
Location 14,333,027 – 14,333,124
Length 97
Max. P 0.615035
window8839

overview

Window 9

Location 14,333,027 – 14,333,124
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 90.10
Mean single sequence MFE -20.42
Consensus MFE -15.54
Energy contribution -16.22
Covariance contribution 0.68
Combinations/Pair 1.21
Mean z-score -1.61
Structure conservation index 0.76
SVM decision value 0.17
SVM RNA-class probability 0.615035
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14333027 97 - 27905053
CUAAACUUGAAUCAUUUUCAAGGAAAAUAUGCAAUUAUGAGGGGAAUGCUCUUGUAAGCAGUUUCAAAUUUGCGAAUGACUGAAUUUGAUUCCCAUA
........((((((..((((..............(((..((((.....))))..)))((((........)))).......))))..))))))..... ( -20.60)
>DroSec_CAF1 111804 94 - 1
CUAAACUUGAAUAAUUUUCAAGGAAAAUAUGCAAUUACAAGGGGAAUGCUCUUGUAAGCAG---CAAAUUUGCGAAUGACUGAAUUUGAUUUCCAUA
......(((((.....)))))(((((...(((..(((((((((.....)))))))))...)---))......(((((......))))).)))))... ( -22.70)
>DroSim_CAF1 107331 97 - 1
CUAAACUUGAAUAAUUUUCAAGGAAAAUAUGCAAUUACAAGGGGAAUGCUCUUGUAAGCAGUUUCAAAUUUGCGAAUGACUGAAUUUGAUUCCCAUA
.....((((((.....))))))((((...(((..(((((((((.....)))))))))))).)))).......(((((......)))))......... ( -22.80)
>DroEre_CAF1 114537 97 - 1
CUAAACUUGAAUCAUUUUCAAGGAAAGUAUGCAAUUAUAGGGUUAAUGCUCUUGUAAGCAGUUUCAAAUUCGCGACUGACUGCACUUGAUUCCCAUA
.....((((((.....))))))..((((......(((((((((....)).)))))))((((((((........))..)))))))))).......... ( -19.90)
>DroYak_CAF1 119851 96 - 1
CUAAACUUGAAUAAUCUUCAAGGAAAAUGUGCAAUUUAA-GGGCAAUGCUUUUAUAAGCAGUUUCAAAUUUGCGAAUGACUGAAUUGGAUUCCCAUA
.....((((((.....)))))).......(((((.((..-((((..(((((....)))))))))..)).)))))...........(((....))).. ( -16.10)
>consensus
CUAAACUUGAAUAAUUUUCAAGGAAAAUAUGCAAUUACAAGGGGAAUGCUCUUGUAAGCAGUUUCAAAUUUGCGAAUGACUGAAUUUGAUUCCCAUA
.....((((((.....)))))).......(((..(((((((((.....))))))))))))(..(((((((((........)))))))))..)..... (-15.54 = -16.22 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:32 2006