Locus 5430

Sequence ID 3R_DroMel_CAF1
Location 14,326,832 – 14,326,922
Length 90
Max. P 0.612144
window8837

overview

Window 7

Location 14,326,832 – 14,326,922
Length 90
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 81.10
Mean single sequence MFE -34.12
Consensus MFE -19.10
Energy contribution -20.10
Covariance contribution 1.00
Combinations/Pair 1.24
Mean z-score -1.95
Structure conservation index 0.56
SVM decision value 0.16
SVM RNA-class probability 0.612144
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14326832 90 - 27905053
CUGAUUUCGGCG---GCGGAAAAAGAUGCCGCGGAAGAAGUCAGC-----GCUGUUCACUUGAGUGGAUUAUAAUUUCCGCAAUG-------GCCAAUGGUCGUU
((((((((.(((---(((........))))))....)))))))).-----.............(((((........)))))((((-------(((...))))))) ( -31.40)
>DroSec_CAF1 105624 100 - 1
CUGAUUUCGGCG---GCAGA--AAGAUGCCGCGGAAGAAGGCAGCGCAGCGCAGUUCAUCUGAGUGGAUUAUAAUUUCCGCAAUGGCCGAUGGCCAAUGGUCGUU
....((((.(((---(((..--....)))))).))))..(((.(((...)))...........(((((........)))))....)))(((((((...))))))) ( -36.40)
>DroSim_CAF1 100841 100 - 1
CUGAUUUCGGCG---GCGGA--AAGAUGCCGCGGAAGAAGGCAGCGCAGCGCAGUUCAUCUGAGUGGAUUAUAAUUUCCGCAAUGGCCGAUGGCCAAUGGUCGUU
....((((.(((---(((..--....)))))).))))..(((.(((...)))...........(((((........)))))....)))(((((((...))))))) ( -35.50)
>DroEre_CAF1 108383 90 - 1
CUGAUUUCGGCG---GCGGG--AAGCAGCUGA-----GAGGCAGC-----GCAAUGCACUUGAGUGGAUUAUAAUUUCCGCAGUGGCCAAUGACCAGUGGUCGUU
........(((.---(((((--((((.(((..-----..))).))-----..(((.(((....))).)))....)))))))....)))(((((((...))))))) ( -32.30)
>DroYak_CAF1 113317 93 - 1
CUGAUUUCGGCGGCGGCGGA--AAGAAGCUGU-----AAGGCAGC-----GCAGUUCACCUGAGUGGAUUAUAAUUUCCGCAAUGGCCAAUGACCAAUGGUCGUU
........(((.(..(((((--((...((((.-----....))))-----..(((((((....)))))))....)))))))..).)))(((((((...))))))) ( -35.00)
>consensus
CUGAUUUCGGCG___GCGGA__AAGAUGCCGCGGAAGAAGGCAGC_____GCAGUUCACCUGAGUGGAUUAUAAUUUCCGCAAUGGCCAAUGGCCAAUGGUCGUU
........(((....(((((.......(((.........)))..........(((((((....)))))))......)))))....)))(((((((...))))))) (-19.10 = -20.10 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:30 2006