| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,322,501 – 14,322,608 |
| Length | 107 |
| Max. P | 0.951440 |
| Location | 14,322,501 – 14,322,608 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 70.61 |
| Mean single sequence MFE | -26.22 |
| Consensus MFE | -16.74 |
| Energy contribution | -16.63 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.951440 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14322501 107 - 27905053 CCAAUGCCAAAUAUGGCCAGGCCACAGCGAAUACUGCGAGUCGUUGGCUAAAAGCGCUGACAAUUUGGCCAUUUUUU--AUCCAAUUUCAAU-----ACUCAACUUUAUCA-CUU--- ........(((.(((((((((((.(((......))).).)))((..((.......))..))....))))))).))).--.............-----..............-...--- ( -23.70) >DroSec_CAF1 101525 90 - 1 CCAAUGCCAAAUAUGGCCAGGCCACAGCGAGUACUGCGAGUCGUUGGCUAAAAGCGCUGACCAUUUGGCCAUUUUUU--AUUCCACUUUUAU-------------------------- ........(((.(((((((((((.(((......))).).)))((..((.......))..))....))))))).))).--.............-------------------------- ( -22.80) >DroSim_CAF1 96399 107 - 1 CCAAUGCCAAAUAUGGCCAGGCCACAGCGAGUACUGCGAGUCGUUGGCUAAAAGCGCUGACAAUUUGGCCAUUUUUU--AUUCCAUUUUUAU-----ACUUAACUUUAUCA-CUU--- ........(((.(((((((((((.(((......))).).)))((..((.......))..))....))))))).))).--.............-----..............-...--- ( -23.70) >DroEre_CAF1 104100 86 - 1 CCAAUGCCAAAUAUGGCCGGGCCACGGCGAGUACUGCGAGUGGCUGGCCAAAAGCACUGCCAAUUUGGCCAUUUUCUAUAAUAAAU-------------------------------- .....(((((((.(((((((.((((.(((.....)))..)))))))))))...((...))..))))))).................-------------------------------- ( -29.40) >DroYak_CAF1 106556 92 - 1 CCAAUGCCAAAUAUGGCCGGGCCACAGCGAGUACUGCGAGUUGUUGGCUGAAAGCGCUGCCAAUUUGGACAUUUUUU--AAUAAAGUCUUAU-----AA------------------- ..((((((((((.(((((((((((((((..(.....)..)))).))))).....))..)))))))))).))))....--.............-----..------------------- ( -24.70) >DroAna_CAF1 93007 116 - 1 CCAAUGCCAAAUAUGGCCAGGCCAUGGAGAAUAAUGGUAAAGUGCGACUAAGAGCGUUGCCAACUUGGCUAUUUUUC--AGUCAAGUUUUGGCUUCUUCGAAGCUUUUUUAGCUUAUU .....((((((((((((...))))))........((((((...((........)).))))))((((((((.......--)))))))))))))).......(((((.....)))))... ( -33.00) >consensus CCAAUGCCAAAUAUGGCCAGGCCACAGCGAGUACUGCGAGUCGUUGGCUAAAAGCGCUGACAAUUUGGCCAUUUUUU__AUUCAAUUUUUAU_____AC___________________ .....((((....))))..(((((((((((.(......).))))))((.....))..........)))))................................................ (-16.74 = -16.63 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:27 2006