Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 14,315,657 – 14,315,765 |
Length | 108 |
Max. P | 0.745856 |
Location | 14,315,657 – 14,315,765 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 66.47 |
Mean single sequence MFE | -36.68 |
Consensus MFE | -10.76 |
Energy contribution | -12.48 |
Covariance contribution | 1.73 |
Combinations/Pair | 1.35 |
Mean z-score | -2.05 |
Structure conservation index | 0.29 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.745856 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14315657 108 - 27905053 CCAAUCCCAUUCCAUGGAGCACAGGGCUCCGUUUGCCGCAACCUGAUGCGGCGAGUUUCAACCU-------CAUAUGGUUAAGAAUGAUAUGGGGAACAGUUCGACAGAGUAGGA---- ....(((.((((.(((((((.....)))))))((((((((......)))))))).......(((-------(((((.((.....)).))))))))............)))).)))---- ( -37.80) >DroSec_CAF1 94805 108 - 1 CCAAUCCCAUUCCAUGGAACGCAGGGCUCCGUUUGCCGCAACCUGAUGCGGCGAGUUUCAACCU-------CAUAUGGUGAAGAAUGAUAUGGGGAACAGUUCGAUAGAGUAGGA---- ....(((.((((.((.((((...(..((((((((((((((......)))))))).(((((.((.-------.....)))))))......))))))..).)))).)).)))).)))---- ( -38.00) >DroSim_CAF1 88896 91 - 1 CCAAUCCCAUUCCAUGGAGCGCAGGGCUCCGUUCGCCACAACUUGAUGCGGCGAGUUUCAACCU-------CAUAGGGAGAGGAA-----------------CGCUAGAGUGGGA---- ....((((((((.(((((((.....)))))))(((((.((......)).)))))(((((..(((-------....)))...))))-----------------)....))))))))---- ( -36.10) >DroEre_CAF1 97682 96 - 1 CCAAUUCCGUUGCAUGGAGCGCAGGGUUGCGAUCGCCGCAACCUGAUGCUGCGAGUUGCAACCU-------------------AAAGAUAUGGGGAGUGCUGCGACAGAGUUCAA---- ..(((((.((((((((.((((..((((((((.....))))))))..)))).))....(((.(((-------------------(......))))...))))))))).)))))...---- ( -38.30) >DroYak_CAF1 95316 108 - 1 CCAAUCCCACUGCAUGGAGCGCAGGGCUGCGAUCGCCGCAACCUGAUGCUGCGAGUUCCAACCU-------CAUAUGGUGAGGAAAGUUAUGGGGAAUACUACGACAGAGUUGAA---- ....(((((..((.(((((((((....)))..((((.(((......))).)))))))))).(((-------(((...))))))...))..))))).......((((...))))..---- ( -37.10) >DroPer_CAF1 104860 101 - 1 CCAGUCCCAUUCCGUG--------GGCUCUGAUCGGGGCAACCCGAUUUCAAAAGGUUCAACUUGCAUCGACAUAUG----------AAGUGGGGAUAUUUUCGGGGGACCAGCAGUAU ...(((((...(((((--------((((..(((((((....)))))))......)))))).((..(.(((.....))----------).)..))........))))))))......... ( -32.80) >consensus CCAAUCCCAUUCCAUGGAGCGCAGGGCUCCGAUCGCCGCAACCUGAUGCGGCGAGUUUCAACCU_______CAUAUGGUGA_GAA_GAUAUGGGGAACACUUCGACAGAGUAGGA____ ....((((......((.(((.....))).)).((((((((......))))))))......................................))))....................... (-10.76 = -12.48 + 1.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:24 2006