| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,286,651 – 14,286,759 |
| Length | 108 |
| Max. P | 0.842246 |
| Location | 14,286,651 – 14,286,759 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 79.05 |
| Mean single sequence MFE | -39.43 |
| Consensus MFE | -24.58 |
| Energy contribution | -26.13 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.842246 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14286651 108 - 27905053 GGUUAAAUCGCCACAGGCGCGUAACCUGUCUUAAGACCUUUUGCGCAAGUGCAAAAAUUGGCCAAAGUGGCG------GCGGUGGCGGUGUUGGUGGCGGCAUUUAGCCAGGCU ((((((((((((((..((((((.(((.(((........(((((((....)))))))....(((.....))))------))))).)).))))..))))))..))))))))..... ( -43.70) >DroVir_CAF1 67564 105 - 1 GGUUAAAUCGCCGCAGGCGCGUAACCUGUCUGAAGACCUUUUGCGCAAGUGCAAAAAUUGGCCAAA---------GUGGCGACGACAACGGCAGCGGCAACAUUUAACUGCGUC ((((((((.(((((..((.(((....((((........(((((((....)))))))....(((...---------..)))...))))))))).)))))...))))))))..... ( -34.10) >DroPse_CAF1 71587 111 - 1 GGUUAAAUCGCCGCAGGCGCGUAACCUGUCUUGAGACCUUUUGCGCAAGUGCAAAAAUUGGCCAAAGUGGCGGCAUCGGCAGCAGCAG---CAGCGGCGGCAUUUAGCCAGGCC ((((((((.(((((..((((.....(((((..((..(((((((((....)))))))....(((.....)))))..))))))).....)---).)).)))))))))))))..... ( -44.20) >DroYak_CAF1 63010 105 - 1 GGUUAAAUCGCCGCAGGCGCGUAACCUGUCUUAAGACCUUUUGCGCAAGUGCAAAAAUUGUCCAAAGUGGCGGCGGCGGUGGU---------GGUGGCUGCAUUUAGCCAGGUU ((((((((((((((..((((((((...(((....)))...))))))..(..((.....))..)...)).))))))(((((...---------....)))))))))))))..... ( -38.40) >DroAna_CAF1 57913 90 - 1 GGUUAAAUCGCCGCAGGCGCGUAACCUGUCUUGAGACCUUUUGCGCAAGUGCAAAAAUUGGCCAAAGUGGCGGC------------------------GGCAUUUAGCCAGGCC ((((((((.(((((....((((((...(((....)))...))))))..............(((.....))).))------------------------)))))))))))..... ( -35.00) >DroPer_CAF1 72986 105 - 1 GGUUAAAUCGCCGCAGGCGCGUAACCUGUCUUGAGACCUUUUGCGCAAGUGCAAAAAUUGGCCAAAGUGGCGGCAUCGGCAGCAGCAG---------CGGCAUUUAGCCAGGCC ((((((((.(((((..((((((((...(((....)))...))))))...(((........(((.....))).((....)).))))).)---------))))))))))))..... ( -41.20) >consensus GGUUAAAUCGCCGCAGGCGCGUAACCUGUCUUAAGACCUUUUGCGCAAGUGCAAAAAUUGGCCAAAGUGGCGGC__CGGCGGC_GCAG_____G_GGCGGCAUUUAGCCAGGCC ((((((((.(((((....((((((...(((....)))...))))))..............(((.....))).........................)))))))))))))..... (-24.58 = -26.13 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:18 2006