Locus 5421

Sequence ID	3R_DroMel_CAF1
Location	14,281,027 – 14,281,118
Length	91
Max. P	0.896906

overview

Window 2

Location	14,281,027 – 14,281,118
Length	91
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	65.00
Mean single sequence MFE	-21.20
Consensus MFE	-6.37
Energy contribution	-7.49
Covariance contribution	1.12
Combinations/Pair	1.08
Mean z-score	-2.43
Structure conservation index	0.30
SVM decision value	0.99
SVM RNA-class probability	0.896906
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14281027 91 - 27905053
CCAUGCCCCCCCCCCCCCAUGCCCCUUGUGAAGCCCC--CUGCCCUGUAAAUUUAUGCAUCACCCGAAGCAGCUGGCUUCAUCGUAAUGCAAA
...................(((.....((((((((..--((((..((((......))))((....)).))))..))))))))......))).. ( -20.30)
>DroPse_CAF1 65070 74 - 1
--U-C---CG---GUCUCCUCCGGUCUCUGA-GUCUUAGCCGC---------UCCGGCAUCACUUCGAGCAGCUGCCUGCAGCGCCAUGUAAA
--.-(---((---(......)))).(((.((-((..(.((((.---------..)))))..)))).)))..((((....)))).......... ( -21.60)
>DroSec_CAF1 60365 86 - 1
--ACA---CCCCCACCCCCUCCCCAUUGCGAAGCCCC--CUGCUCUGCAAAUUUAUGCAUCACCCGAAGCAGCUGGCUUCAUCGUAAUGCAAA
--...---...............((((((((((((..--(((((.((((......))))((....)))))))..))))...)))))))).... ( -23.10)
>DroSim_CAF1 52069 86 - 1
--ACA---CCCCCACCCCCUCCCCAAUGUGAAGCCCC--CUGCUCUGCAAAUUUAUGCAUCACCCGAAGCAGCUGGCUUCAUCGUAAUGCAAA
--...---.................((((((((((..--(((((.((((......))))((....)))))))..))))))).)))........ ( -21.30)
>DroPer_CAF1 66501 74 - 1
--U-C---CG---GUCUCCUCCGGUCUCUGA-GUCUUAGCCGC---------UCCGGCAUCACUUCGAGCAGCUGCCUUCAGCGCCAUGUAAA
--.-(---((---(......)))).(((.((-((..(.((((.---------..)))))..)))).)))..((((....)))).......... ( -19.70)
>consensus
__A_A___CCCCCACCCCCUCCCCACUGUGAAGCCCC__CUGC_CUG_AAAUUUAUGCAUCACCCGAAGCAGCUGGCUUCAUCGUAAUGCAAA
...........................((((((((....((((.........................))))..))))))))........... ( -6.37 =  -7.49 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:15 2006