Locus 542

Sequence ID 3R_DroMel_CAF1
Location 2,012,150 – 2,012,262
Length 112
Max. P 0.610195
window863

overview

Window 3

Location 2,012,150 – 2,012,262
Length 112
Sequences 3
Columns 112
Reading direction reverse
Mean pairwise identity 92.26
Mean single sequence MFE -31.83
Consensus MFE -27.89
Energy contribution -28.23
Covariance contribution 0.34
Combinations/Pair 1.09
Mean z-score -1.85
Structure conservation index 0.88
SVM decision value 0.16
SVM RNA-class probability 0.610195
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2012150 112 - 27905053
GUUCGGUUGUUCAUCAAUGAACCUCUUAUAUCCGCCUCACAGGAUUAUGGAGGCAGCAUGGCACAUUGCUGGCAUUUUCGGAGUGAGCUUGAUGUAAACCAAGUCCAGCUAC
....((((...((((((((..(((((...((((........))))...)))))...)))(((.((((.((((.....)))))))).))))))))..))))............ ( -31.80)
>DroSec_CAF1 154138 112 - 1
AUUCGGUUGUCCAUCAAUGAACCUCAUAUAUCCGCCUCACAGGAUUAUGAAGGCAGCAUGGAACUUUGCUAACAUUUCCGGAGUCAGCUUGGUGUAAACCAAGUCCAACUAC
....((((((((...((((..(((((((.((((........)))))))).))).((((........))))..))))...)))....(((((((....))))))).))))).. ( -31.00)
>DroSim_CAF1 159715 112 - 1
GUUCGGUUGUCCAUCAAUGAACCUCAUAUAUCCGCCUCACAGGAUUAUGAAGGUAGCAUGGAACUUUGCUAACAUUUCCGGAGUCAGCUUGGUGUAAACCAAGUCCAACUAC
....((((((((...((((.((((((((.((((........)))))))).))))((((........))))..))))...)))....(((((((....))))))).))))).. ( -32.70)
>consensus
GUUCGGUUGUCCAUCAAUGAACCUCAUAUAUCCGCCUCACAGGAUUAUGAAGGCAGCAUGGAACUUUGCUAACAUUUCCGGAGUCAGCUUGGUGUAAACCAAGUCCAACUAC
....((((((((...((((..(((((((.((((........)))))))).)))(((((........))))).))))...)))....(((((((....))))))).))))).. (-27.89 = -28.23 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:37 2006