Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 14,277,058 – 14,277,150 |
Length | 92 |
Max. P | 0.698075 |
Location | 14,277,058 – 14,277,150 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 76.92 |
Mean single sequence MFE | -12.08 |
Consensus MFE | -7.84 |
Energy contribution | -7.84 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.62 |
Structure conservation index | 0.65 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.698075 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14277058 92 + 27905053 CCCAUAAACGGCAAUUCUCUUGCCGCCAGACAGUUUACAACAUCAGAAACAAUAGCAAAAACAGC---------AAA-AAGUAACAACAGCCA-UAGUUUGGA ........((((((.....))))))((((((.((((.(.......)))))....((.......))---------...-...............-..)))))). ( -16.80) >DroSec_CAF1 56383 81 + 1 CCCAUAAACGGCAAUUCUCUUGCCGCCAGACAGUUUACAACAUCAGAAACAAUAGCAAAAUCAGC---------AAA-AAGUAACAACAGC------------ ........((((((.....))))))....((.((((.(.......)))))....((.......))---------...-..)).........------------ ( -8.80) >DroSim_CAF1 48079 81 + 1 CCCAUAAACGGCAAUUCUCUUGCCGCCAGACAGUUUACAACAUCAGAAACAAUAGCAAAAACAGC---------AAA-AAGUAACAACAGC------------ ........((((((.....))))))....((.((((.(.......)))))....((.......))---------...-..)).........------------ ( -8.80) >DroEre_CAF1 58491 102 + 1 CCCAUAAACGGCAAUUCUCUUGCCGCCAGACAGUUUACAACAUUAGAAACAAUGGCAAACACAACAAAACCAGCAAAAAAGUAACAACAGCCA-UAGUUAAGA ......((((((((.....)))))((((.....((((......)))).....)))).....................................-..))).... ( -14.40) >DroAna_CAF1 48287 76 + 1 CCCAUAAACGGCAAUUCUCUUGCCGUCAGCCAGUUUACAACAUUAGAAACAC---------------------------ACUAACAACAGCCACUAGCCAAGA .......(((((((.....)))))))..((.(((........((((......---------------------------.))))........))).))..... ( -11.59) >consensus CCCAUAAACGGCAAUUCUCUUGCCGCCAGACAGUUUACAACAUCAGAAACAAUAGCAAAAACAGC_________AAA_AAGUAACAACAGCCA_UAG____GA ........((((((.....)))))).......((((.(.......)))))..................................................... ( -7.84 = -7.84 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:13 2006