| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,269,953 – 14,270,054 |
| Length | 101 |
| Max. P | 0.999099 |
| Location | 14,269,953 – 14,270,054 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 76.73 |
| Mean single sequence MFE | -23.54 |
| Consensus MFE | -21.42 |
| Energy contribution | -21.42 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.91 |
| SVM decision value | 3.37 |
| SVM RNA-class probability | 0.999099 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14269953 101 - 27905053 GGGUCCACCCUAAUGGGUUGGUCUGUAUGGCUCACAUAUCAGCCCAAAACACAGGGCCAAUUUCCCAAAG--AACCCCCCUUUUCCUCAUUU-----CGCUCUCAUUU .(((((((((....))))(((.(((((((.....)))).))).))).......)))))............--....................-----........... ( -24.10) >DroEre_CAF1 51291 102 - 1 UGGUCCACCCUAUUGGGCUGGUCUGUGUGGCACACAUAUCAGUCU-AAACCCAGGUCCAAUUUACCAGCCCCCAGCCCCCCUUCCCCCAUUC-----CGCUCUCGUUU (((.((......((((((((((.((((.....)))).))))))))-)).....)).))).................................-----........... ( -22.00) >DroYak_CAF1 46117 107 - 1 UGGUCCACCCUAAUGGGUUGGUCUGUGUGGCACACAUAUCAGCCU-AAACCCAGGGCCAAUUUAACAACCCCCUUCCACCUUUUCCCUUUCCCCAUGUGCUCUCUUCU ((((((.......(((((((((.((((.....)))).))))))))-)......))))))................................................. ( -24.52) >consensus UGGUCCACCCUAAUGGGUUGGUCUGUGUGGCACACAUAUCAGCCU_AAACCCAGGGCCAAUUUACCAACCCCCACCCCCCUUUUCCCCAUUC_____CGCUCUCAUUU .(((((........((((((((.((((.....)))).))))))))........))))).................................................. (-21.42 = -21.42 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:07 2006