Locus 5415

Sequence ID 3R_DroMel_CAF1
Location 14,269,230 – 14,269,328
Length 98
Max. P 0.682479
window8812

overview

Window 2

Location 14,269,230 – 14,269,328
Length 98
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 90.00
Mean single sequence MFE -21.42
Consensus MFE -15.81
Energy contribution -16.41
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.86
Structure conservation index 0.74
SVM decision value 0.31
SVM RNA-class probability 0.682479
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14269230 98 + 27905053
ACAUGUGGC-CUAAUUCAGGCAAA----------AAAUUAAAUAAAAUCCACGAACAGCAAGCAAAUAUUGGGCAACAUGUGCCACUGACUUGGCACUGCGAAAUUCCC
((((((.((-(((((....((...----------...........................))....))))))).))))))((((......)))).............. ( -21.91)
>DroSec_CAF1 48687 109 + 1
ACAUGCGGCCCUAAUUCAUGCAAAAAAAAAGCAAAAAUUAAAUUUAAUCCACGAACAGCAACCAAAUAUUGGGCGACAUGUGCCACUGACUUGGCACUGCGAAAUUCCC
...(((((((((((((..(((.........)))..)))))............(.....)...........)))).....((((((......))))))))))........ ( -20.60)
>DroSim_CAF1 39958 109 + 1
ACAUGUGGCCCUAAUUCAUGCAAAAAAAAAGCAAAAAUUAAAUAAAAUCCACGAACGGCAACCAAAUAUUGGGCAACAUGUGCCACUGACUUGGCACUGCGAAAUUCCC
((((((.(((((((((..(((.........)))..)))))................(....)........)))).))))))((((......)))).............. ( -24.00)
>DroEre_CAF1 50479 99 + 1
ACAUGUGGCCCUAAUUCAUGCAAA----------AAAUUAAAUGAAAUCCACGAACAGCAACCGACUAUUGGGCAACAUGUGCCACUGACUUGGCACUGCGAAAUUCCC
((((((.((((...(((((.....----------.......))))).....((.........))......)))).))))))((((......)))).............. ( -21.60)
>DroYak_CAF1 45263 99 + 1
ACAUGUGGCCCUAAUUCAUGCAAA----------AAAUUAAAUUAAAUCCACGAACAGCAACCAACUAUUGGGCAACAUGUGCCACUGACUUGGCACUGCGAAAUUCCC
((((((.((((.......(((...----------.......................)))..........)))).))))))((((......)))).............. ( -19.00)
>consensus
ACAUGUGGCCCUAAUUCAUGCAAA__________AAAUUAAAUAAAAUCCACGAACAGCAACCAAAUAUUGGGCAACAUGUGCCACUGACUUGGCACUGCGAAAUUCCC
((((((.((((.......(((....................................)))..........)))).))))))((((......)))).............. (-15.81 = -16.41 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:06 2006