Locus 5414

Sequence ID 3R_DroMel_CAF1
Location 14,257,608 – 14,257,727
Length 119
Max. P 0.765828
window8811

overview

Window 1

Location 14,257,608 – 14,257,727
Length 119
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 78.83
Mean single sequence MFE -48.58
Consensus MFE -23.35
Energy contribution -22.82
Covariance contribution -0.52
Combinations/Pair 1.38
Mean z-score -2.31
Structure conservation index 0.48
SVM decision value 0.51
SVM RNA-class probability 0.765828
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14257608 119 + 27905053
CCAGCAAUCUGUGCAUGGCAGAAUCCAAGCCCUCGUUCUGAUAAUGCAGCUGAAAGCUCUUCAACUGAGCCUCCACUGCCUGGUGGAGGAGCAUUUGAUGCAUGGACUUGUUGCCAGUG
.((((((((((((((..(((..(((..(((....)))..)))..)))(((.....)))..((((.((..((((((((....))))))))..)).)))))))))))).))))))...... ( -42.30)
>DroPse_CAF1 42295 110 + 1
GCAGCAGGCGCUGCACGGUGGAGUCGAGGCUCUCCUGCUGGUAGUGCUGCUGCAGGCUCUUCAGCUGCGCCUCCACGGCCUGGUGGAGGAGCAUCUGGUGCACGGACUUG---------
(((((((.((((((.((((((((........)))).)))))))))))))))))..((...((((.(((.(((((((......))))))).))).)))).)).........--------- ( -57.70)
>DroEre_CAF1 39344 119 + 1
CCAGCAACCGCUGCAUGGCGGAAUCCAAACCCUCGUUCUGGUAAUGCAGCUGGAAGCUCUUCAACUGAGCCUCCACUGCGUGGUGCAGGAGCAUUUGGUGCAUGGACUUGUUGCCACUG
.(((((((((((....)))))..((((.(((...(((((.(((((((((.((((.((((.......)))).))))))))))..))).)))))....)))...)))).))))))...... ( -45.90)
>DroYak_CAF1 33091 119 + 1
CCAGCAAUCGCUGCAUGGCGGAAUCCAAACCCUCGUUCUGGUAAUGCAGCUGGAAGCUCUUCAACUGAGCCUCCACUGCCUGGUGCAGGAGCAUUUGGUGCAUGGACUUGUUGCCAAUG
.((((....))))..((((((..((((.(((...(((((.(((..((((.((((.((((.......)))).))))))))....))).)))))....)))...))))....))))))... ( -43.90)
>DroAna_CAF1 29366 119 + 1
GAAGCAAUCUUUGCAUUGCAGUGUCCAAGCUCUCAUUCUGAUAGUGGAGCUGCAAGCUUUUCAGCUGGGCUUCCAUCGCCUGGUGCAAUAGCAGUUGGUGCAUGGACUUGUUCCCAGCA
((((((.....))).(((((((.((((...((.......))...)))))))))))....))).((((((..(((((((((.(.(((....))).).)))).)))))......)))))). ( -44.00)
>DroPer_CAF1 42098 110 + 1
GCAGCAGGCGCUGCACGGUGGAGUCGAGGCUCUCCUGCUGGUAGUGCUGCUGCAGGCUCUUCAGCUGCGCCUCCACGGCCUGGUGGAGGAGCAUCUGGUGCACGGACUUG---------
(((((((.((((((.((((((((........)))).)))))))))))))))))..((...((((.(((.(((((((......))))))).))).)))).)).........--------- ( -57.70)
>consensus
CCAGCAAUCGCUGCAUGGCGGAAUCCAAGCCCUCGUUCUGGUAAUGCAGCUGCAAGCUCUUCAACUGAGCCUCCACUGCCUGGUGCAGGAGCAUUUGGUGCAUGGACUUGUUGCCA_UG
...(((.(((((((((..(((................)))...))))))).))..((((((..(((..((.......))..)))..))))))......))).................. (-23.35 = -22.82 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:05 2006