Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 14,248,826 – 14,248,917 |
Length | 91 |
Max. P | 0.645058 |
Location | 14,248,826 – 14,248,917 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 81.53 |
Mean single sequence MFE | -35.37 |
Consensus MFE | -31.30 |
Energy contribution | -30.97 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.20 |
Mean z-score | -1.33 |
Structure conservation index | 0.88 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.645058 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14248826 91 - 27905053 AUUAA-------------UCG-CGCAGGCUCCAAGGCCUGGCACAUGCGGCUAACUUUCGAGCGCCUCUCGGGCGGCUGCAACCUGCACCGUUGCAAGCUGUGCG .....-------------...-..((((((....))))))(((((((((((............(((.....)))((.(((.....)))))))))))...))))). ( -33.50) >DroPse_CAF1 33572 82 - 1 -----------------------AAAGGCUCGAAGGCCUGGCACAUGCGGCUCACCUUCGAGCGCCUCUCGGGCGGCUGCAACCUGCACCGUUGCAAGCUGUGCG -----------------------....(((((((((...(((.......)))..)))))))))......((.(((((((((((.......))))).)))))).)) ( -35.60) >DroWil_CAF1 25974 91 - 1 GAUCA-------------UCG-UCUAGGCUCAAAAGCCUGGCACAUGCGGCUAACAUUCGAGCGCCUGUCCGGCGGCUGCAACCUGCAUCGCUGCAAGCUGUGUG .....-------------..(-.(((((((....)))))))).(((((((((......((..(....)..))((((((((.....)))..))))).))))))))) ( -33.00) >DroMoj_CAF1 19310 104 - 1 AAUAAAUGAAAUACGCAUACGA-GCAGGCUCGAAGGCCUGGCACAUGCGGCUCACCUUCGAGCGCCUCUCCGGCGGCUGCAACCUGCAUCGCUGCAAGCUGUGCG .............(((((((..-(((((((((((((...(((.......)))..)))))))))(((.....)))((.(((.....))))).))))..).)))))) ( -39.00) >DroAna_CAF1 20843 91 - 1 AUUAA-------------UUA-CGCAGGCUCUAAGGCCUGGCACAUGCGGCUCACGUUCGAGCGCCUCUCGGGCGGCUGCAACCUGCACCGCUGCAAGCUAUGCG .....-------------...-((((((((....))))((((...((((((....(((((((.....)))))))((.(((.....))))))))))).)))))))) ( -35.50) >DroPer_CAF1 33050 82 - 1 -----------------------AAAGGCUCGAAGGCCUGGCACAUGCGGCUCACCUUCGAGCGCCUCUCGGGCGGCUGCAACCUGCACCGUUGCAAGCUGUGCG -----------------------....(((((((((...(((.......)))..)))))))))......((.(((((((((((.......))))).)))))).)) ( -35.60) >consensus A_UAA_____________UCG__GCAGGCUCGAAGGCCUGGCACAUGCGGCUCACCUUCGAGCGCCUCUCGGGCGGCUGCAACCUGCACCGCUGCAAGCUGUGCG ........................((((((....))))))(((((((((((............(((.....)))((.(((.....)))))))))))...))))). (-31.30 = -30.97 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:02 2006