Locus 5411

Sequence ID 3R_DroMel_CAF1
Location 14,228,429 – 14,228,533
Length 104
Max. P 0.996402
window8807

overview

Window 7

Location 14,228,429 – 14,228,533
Length 104
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 75.96
Mean single sequence MFE -25.62
Consensus MFE -17.60
Energy contribution -17.73
Covariance contribution 0.12
Combinations/Pair 1.19
Mean z-score -2.41
Structure conservation index 0.69
SVM decision value 2.69
SVM RNA-class probability 0.996402
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14228429 104 - 27905053
UCAAUUUGCUCUCAGUGUGCCACAGUCCGACUGUGCGAUAAUCGCACAUCGAUAACACUCGAUACACACAC---------CAGCUGUUCCGCCCGCUCCCCCCGCGCACAAAA
..............((((((.(((((......(((((.....)))))(((((......)))))........---------..)))))...(....).......)))))).... ( -24.40)
>DroSim_CAF1 9366 105 - 1
--------CUCUCAGUGCUCCACAGGCCGAUAGUGCGAUAAUCGCACAUCGAUAACACUCGAUACACACACCUCCAUCGCCAGCUGUUCCGCCUGCGCCCCCCGCGCACAUCA
--------......((((....(((((((((.(((((.....)))))))))..((((((((((............))))..)).))))..))))).((.....)))))).... ( -29.40)
>DroEre_CAF1 4242 113 - 1
AUAAUUUCAUUUCAGUGCGCCACAGUCCGAUAGUGCGAUAACCCCACAUCGAUUACACUCGAUAGGCACAUCUCCAUCGCCAGCUGUUCCACCUGCUCCCCCCGCGCACACCU
..............((((((..(((...(((((((((((........(((((......))))).((.......)))))))..))))))....)))........)))))).... ( -24.40)
>DroYak_CAF1 1110 108 - 1
UUAAUUUUCUCUCAGUGUGCCACUGGCCGAUACUGCGAUAACUGCACAUCGAUUCCACUUGAUAAACACAUCUCCAUCACCAGCUGUUCCGGCUACU-----CGCGCACACCU
..............((((((...((((((..((.(((((........)))..........(((......)))..........)).))..))))))..-----.)))))).... ( -24.30)
>consensus
UUAAUUU_CUCUCAGUGCGCCACAGGCCGAUAGUGCGAUAACCGCACAUCGAUAACACUCGAUACACACACCUCCAUCGCCAGCUGUUCCGCCUGCUCCCCCCGCGCACACCA
..............((((((............(((((.....)))))(((((......)))))........................................)))))).... (-17.60 = -17.73 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:01 2006