Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,009,162 – 2,009,270 |
Length | 108 |
Max. P | 0.694511 |
Location | 2,009,162 – 2,009,270 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 88.43 |
Mean single sequence MFE | -30.59 |
Consensus MFE | -23.94 |
Energy contribution | -25.38 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.04 |
Mean z-score | -1.63 |
Structure conservation index | 0.78 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.694511 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2009162 108 + 27905053 CGCAGGCAAUUC------UUCUUC---UAGGCCCCAGCCGGGCCAAUAUAGAAAUUCUAUGUUCGGCGACCUUUAUGUUCCGAUGUUUACCAGCUUCUUAUCAG-GCCUGCCUUUGUG .((((((.....------......---..(((((.....))))).((((((.....))))))((((.(((......))))))).....................-))))))....... ( -30.90) >DroSec_CAF1 151260 114 + 1 CGCAGGCGAUUUUUCUUCUUCUUC---UAGGCCCCAGCCGGGCCAAUAUAGAAAUGCUAUGUUCGGCGUCCUUUAUGUUCCGAUGUUUACCAGCUUCUUAUCAG-GCCUGCCUUUGUU .((((((.................---..(((((.....)))))((((((((.(((((......)))))..))))))))..((((.............))))..-))))))....... ( -30.92) >DroSim_CAF1 156460 114 + 1 CGCAGGCGAUUCUUCUUCUUCUUC---UAGGCCCCAGCCGGGCCAAUAUAGAAAUGCUAUGUUCGGCGUCCUUUAUGUUCCGAUGUUUACCAGCUUCUUAUCAG-GCCUGCCUUUGUU .((((((.................---..(((((.....)))))((((((((.(((((......)))))..))))))))..((((.............))))..-))))))....... ( -30.92) >DroEre_CAF1 154937 110 + 1 CGCAGGCGAUUC------UUCUUCUGCUAGACCCCAGCUGGGCCAAUAUAGAAAUGCUAUGUUCGGCGUCCUUUU--UUCCGAUGUUUACCAGCUUCUUAUCAGGGCCUGCCUUUGUU .((((((((...------.)).((((..(((....((((((((((((((((.....))))))).)))(((.....--....))).....)))))))))...))))))))))....... ( -34.90) >DroYak_CAF1 157893 109 + 1 CGCAGGCAAUUC------UUUUUU---CAGGCUCCAGAUGGGCCAAUAUACAAAUGCUCUGUUCGGCGUCCUUUUUGUUCCGAUGUGUACCAGCUUCUUAUCAGGGCCUGCCUUUGUU .((((((.....------......---..(((.((....))))).....(((((((((......))))).....)))).((((((.((....))....)))).))))))))....... ( -25.30) >consensus CGCAGGCGAUUC______UUCUUC___UAGGCCCCAGCCGGGCCAAUAUAGAAAUGCUAUGUUCGGCGUCCUUUAUGUUCCGAUGUUUACCAGCUUCUUAUCAG_GCCUGCCUUUGUU .((((((......................(((((.....)))))((((((((.(((((......)))))..))))))))..((((.............))))...))))))....... (-23.94 = -25.38 + 1.44)
Location | 2,009,162 – 2,009,270 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 88.43 |
Mean single sequence MFE | -30.26 |
Consensus MFE | -25.52 |
Energy contribution | -26.16 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.04 |
Mean z-score | -1.42 |
Structure conservation index | 0.84 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.619514 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2009162 108 - 27905053 CACAAAGGCAGGC-CUGAUAAGAAGCUGGUAAACAUCGGAACAUAAAGGUCGCCGAACAUAGAAUUUCUAUAUUGGCCCGGCUGGGGCCUA---GAAGAA------GAAUUGCCUGCG .....((((((((-((.........(((((....))))).......))))).............((((((....(((((.....)))))))---))))..------....)))))... ( -30.29) >DroSec_CAF1 151260 114 - 1 AACAAAGGCAGGC-CUGAUAAGAAGCUGGUAAACAUCGGAACAUAAAGGACGCCGAACAUAGCAUUUCUAUAUUGGCCCGGCUGGGGCCUA---GAAGAAGAAGAAAAAUCGCCUGCG .......((((((-..(((.....((((((.....((((..(.....)....)))))).)))).((((((....(((((.....)))))))---))))..........))))))))). ( -32.80) >DroSim_CAF1 156460 114 - 1 AACAAAGGCAGGC-CUGAUAAGAAGCUGGUAAACAUCGGAACAUAAAGGACGCCGAACAUAGCAUUUCUAUAUUGGCCCGGCUGGGGCCUA---GAAGAAGAAGAAGAAUCGCCUGCG .......((((((-..(((.....((((((.....((((..(.....)....)))))).)))).((((((....(((((.....)))))))---))))..........))))))))). ( -32.80) >DroEre_CAF1 154937 110 - 1 AACAAAGGCAGGCCCUGAUAAGAAGCUGGUAAACAUCGGAA--AAAAGGACGCCGAACAUAGCAUUUCUAUAUUGGCCCAGCUGGGGUCUAGCAGAAGAA------GAAUCGCCUGCG .........(((((((.......((((((......((....--....))..(((((..((((.....)))).)))))))))))))))))).((((..((.------...))..)))). ( -29.81) >DroYak_CAF1 157893 109 - 1 AACAAAGGCAGGCCCUGAUAAGAAGCUGGUACACAUCGGAACAAAAAGGACGCCGAACAGAGCAUUUGUAUAUUGGCCCAUCUGGAGCCUG---AAAAAA------GAAUUGCCUGCG .......(((((((((.........(((((....))))).......)))..(((.....).))...........(((((....)).)))..---......------.....)))))). ( -25.59) >consensus AACAAAGGCAGGC_CUGAUAAGAAGCUGGUAAACAUCGGAACAUAAAGGACGCCGAACAUAGCAUUUCUAUAUUGGCCCGGCUGGGGCCUA___GAAGAA______GAAUCGCCUGCG .......((((((...((((((((((((.......((((.............))))...))))..)))).))))(((((.....)))))......................)))))). (-25.52 = -26.16 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:36 2006