| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,224,269 – 14,224,366 |
| Length | 97 |
| Max. P | 0.991190 |
| Location | 14,224,269 – 14,224,366 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 80.50 |
| Mean single sequence MFE | -33.23 |
| Consensus MFE | -21.30 |
| Energy contribution | -21.19 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -3.10 |
| Structure conservation index | 0.64 |
| SVM decision value | 2.25 |
| SVM RNA-class probability | 0.991190 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14224269 97 + 27905053 GAUACUCUGGAGAGUAUUAUAUUCACAUGACAAGGGUUCGACUAACACACACACACACUGCGAACGUAGUAGGUGCG------UACCU--------GAGUAUCUCAGAGAU (((((((.((.(((((...)))))........................((.(((..(((((....)))))..))).)------).)).--------)))))))........ ( -24.60) >DroEre_CAF1 87474 101 + 1 GAUACUCUAGAGAGUAACAUAUUCUCAUGACAAGGGUGCGACUAACACA----UACACUGCGAAAGUGGUAAGUGCG------UACCCGUAUCUCAGAGUAUCUCAGAGAU ((((((((.(((((((...)))))))..((...(((((((.....(((.----...((..(....)..))..)))))------)))))...))..))))))))........ ( -36.10) >DroYak_CAF1 96434 107 + 1 GAUACUCUAGAGAGUAUCAUAUUCACAUGACAGGGGUGCGACUAACACA----UACACUGCGAAAGUGGUAGGUGCGUACGCGUACCCGUACCGUAGAGUAUCUCACAGAU (((((((((..(((((...)))))..........((((((.........----...((..(....)..)).((((((....)))))))))))).)))))))))........ ( -39.00) >consensus GAUACUCUAGAGAGUAUCAUAUUCACAUGACAAGGGUGCGACUAACACA____UACACUGCGAAAGUGGUAGGUGCG______UACCCGUA_C__AGAGUAUCUCAGAGAU (((((((....(((((...))))).........(((((.......(((........(((((....)))))..)))........)))))........)))))))........ (-21.30 = -21.19 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:56 2006