Locus 5405

Sequence ID 3R_DroMel_CAF1
Location 14,219,821 – 14,219,931
Length 110
Max. P 0.528619
window8800

overview

Window 0

Location 14,219,821 – 14,219,931
Length 110
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 85.74
Mean single sequence MFE -23.05
Consensus MFE -18.30
Energy contribution -18.80
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.41
Structure conservation index 0.79
SVM decision value -0.01
SVM RNA-class probability 0.528619
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14219821 110 + 27905053
UUUCAAACUCGUGGCGACUCUUCAAGGUCUUUUCCAAUCAAAUUGAAGAUUGCAUGAAAUGCUAAACAAGGGAAAAGUACCGAAAAGAAUGAGAAAACAUUUUGGUA--UAC--------
.......((((((....)((((...((((((((((((((........))))((((...))))........))))))).)))...)))))))))..............--...-------- ( -22.60)
>DroSec_CAF1 214446 109 + 1
UUUCAAACUCGUGGCGACUCUUCAAGGUCUUUUCCAAUCAAAUUGAAGAUCGCAUAAAAUGCUUAACAAGGGAAAAGUACCGAAAAGAAUGAGAAAACAUA-UGGUA--UAC--------
.......((((((....)((((...((((((((((.(((........))).((((...))))........))))))).)))...)))))))))........-.....--...-------- ( -21.40)
>DroSim_CAF1 100097 109 + 1
UUUCAAACUCGUGGCGACUCUUCAAGGUCUUUUCCAAUCAAAUUGAAGAUCGCAUAAAAUGCUUAACAAGGGAAAAGUACCGAAAAGAAUGAGAAAACAUA-UGGUA--UAC--------
.......((((((....)((((...((((((((((.(((........))).((((...))))........))))))).)))...)))))))))........-.....--...-------- ( -21.40)
>DroYak_CAF1 82500 116 + 1
UUCGAAACUCGCGUUGAUUCUUCAAGGUCUUUUCCAAACACAUUGAACAUCGCAUAAAAUGCUAUACA--GGAAAAGUACCGAAAAGAAUGAGAAU-CAAU-UGGUGCUUGCUCAGCGAC
........((((....((((((...((((((((((.........(.....)((((...))))......--))))))).)))...))))))(((.((-(...-.))).....))).)))). ( -26.80)
>consensus
UUUCAAACUCGUGGCGACUCUUCAAGGUCUUUUCCAAUCAAAUUGAAGAUCGCAUAAAAUGCUAAACAAGGGAAAAGUACCGAAAAGAAUGAGAAAACAUA_UGGUA__UAC________
.......(((((......((((...((((((((((..((.....)).....((((...))))........))))))).)))...)))))))))........................... (-18.30 = -18.80 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:54 2006