Locus 5402

Sequence ID 3R_DroMel_CAF1
Location 14,212,163 – 14,212,283
Length 120
Max. P 0.807732
window8795

overview

Window 5

Location 14,212,163 – 14,212,283
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.92
Mean single sequence MFE -33.23
Consensus MFE -20.84
Energy contribution -22.20
Covariance contribution 1.36
Combinations/Pair 1.20
Mean z-score -2.97
Structure conservation index 0.63
SVM decision value 0.64
SVM RNA-class probability 0.807732
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14212163 120 - 27905053
CUCGCUUCUUUUUGAGCUCCUCGGUCUUUAAAGCCGUCUUAGCGCGAAUUUCUUGCGUUUCUUUCUUGGUGUUAAGUAUGGUCUUCUUUAGAUCGUGGUAGUUCUGAAAUAGAAAAUAUU
.....(((((((((((((((.((((((...(((((((((((((((.((.................)).)))))))).)))).)))....)))))).)).))))).)))).))))...... ( -33.53)
>DroSec_CAF1 206824 120 - 1
CUCGCUUCUUUUUGAGCUCCUCGGUCUUUAGAGCCGUCUUAGCGCGAAUUUCUUGCGUUUCUUUCUUAGUGUUAAGUAUGGUCUUCUUUAGAUCGUGGUGGUUCUGAAAUAGAAAACAUU
.....(((((((((((((((.((((((..((((((((((((((((.......................)))))))).)))))..)))..)))))).)).))))).)))).))))...... ( -35.20)
>DroSim_CAF1 92576 120 - 1
CUCGCUUCUUUUUGAGCUCCUCGGUCUUUAAAGCCGUCUUAGCGCGAAUUUCUUGCGUUUCUUUCUUUGUGUUAAGUAUGGUCUUCUUUAGAUCGUGGUGGUUCUGAAAUAGAAAGCAUU
...(((((((((((((((((.((((((...((((((((((((((((((.................))))))))))).)))).)))....)))))).)).))))).)))).)).))))... ( -37.63)
>DroEre_CAF1 81897 120 - 1
CUAGCUUCUUUUUGAGCUCCUCGGAUUUUAAAGCUGUCUUCGCGCGAAUUUCUUGCUCCUCUUUCGCAGCGUUUAGAAUGGUCUUCUUCAGAUCGUGGUAGUUCUGAAAUCGGAAUCAUU
..(((((......)))))..((.(((((((.((((((((.((((((((..............))))).)))...)))(((((((.....)))))))..))))).))))))).))...... ( -31.24)
>DroYak_CAF1 74322 120 - 1
CUCGCUUCUUCUUCAGCUCUACGGAUUUUAAAUCCGUCUUCUCGCGGAUUUCUUGCACCUCUAUCGUAGAGUUUAGAAUGAUCUUCUUUAGAUCGUGAUAGUUCUGAAAUCGAAAUCAUU
.((((...((((..((((((((((.....((((((((......))))))))............)))))))))).)))).(((((.....)))))))))...................... ( -28.53)
>consensus
CUCGCUUCUUUUUGAGCUCCUCGGUCUUUAAAGCCGUCUUAGCGCGAAUUUCUUGCGUUUCUUUCUUAGUGUUAAGUAUGGUCUUCUUUAGAUCGUGGUAGUUCUGAAAUAGAAAACAUU
.....(((((((.(((((((.((((((...(((((((((((((((.......................)))))))).)))).)))....)))))).)).))))).))))..)))...... (-20.84 = -22.20 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:49 2006