| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,191,074 – 14,191,166 |
| Length | 92 |
| Max. P | 0.790644 |
| Location | 14,191,074 – 14,191,166 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 66.48 |
| Mean single sequence MFE | -20.17 |
| Consensus MFE | -12.64 |
| Energy contribution | -12.78 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.790644 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14191074 92 - 27905053 AGAGCCAGGAUAUUGCGGCAUCUGCUGACGAUGUUUUGUAAGUUA---ACUCUAUAACUUAUUCC---------------------UGCUUGUUAAUAAUGUGCAUUAA-AAAUCAA .((((.(((((((((((((....)))).)))))....((((((((---......)))))))))))---------------------)))))..................-....... ( -21.80) >DroSec_CAF1 183239 92 - 1 AGAGCCAGGAUAUUGCAGCAUCUGCUGACGAUGUCUUGUAAGUCA---AAGAGUUAACUUAUCAC---------------------UGCUAAUUAAUAAUGUGCGUUGA-AAAACUA ..(((((((((((((((((....)))).))))))))))(((((.(---(....)).)))))....---------------------.)))..............(((..-..))).. ( -22.60) >DroSim_CAF1 68564 93 - 1 AGAGCCAGGAUAUUGCAGCAUCUGCUGACGAUGUUUUGUAAGUCA---AAGAAUUAACUUAUUCC--------------------UUAUUGAUUAUUAAUAAGCAUUGA-AAUUCAA .(((.((((((((((((((....)))).))))))))))....(((---(.((((......))))(--------------------(((((((...))))))))..))))-..))).. ( -21.40) >DroEre_CAF1 61183 113 - 1 AGAGCCAGGAUAUUGCAGCAUCUGCUGACGAUGUUUUGUAAGUCA---AAGACCUAUCUUAUUAAUAGAAUACCAGAUAUCCCCUUUGCUAUUUAAUUAUGUGAAUUAC-AAUUCUA ((((....(((((((((((....)))).)))))))((((((.(((---((((....))))..((((.(((((.((((.......)))).))))).))))..))).))))-)))))). ( -22.50) >DroWil_CAF1 61026 85 - 1 AGAACCAUGAAAUAGCUGCUUCGGCUGAUGAUGUAAUGUAAGUGUGUCUAGAGUUC-----UAUC---------------------UGCUAAACAAU------CAUUAACAAUUUGU ............((((((...))))))....(((((((....(((...((((....-----..))---------------------))....)))..------)))).)))...... ( -12.00) >DroYak_CAF1 46380 114 - 1 AGAACCAGGAUAUUGCUGCAUCUGCUGAUGAUGUUUUGUAAGUCA--CAAGACCUAUCUUGUUUCUAGAAUACCACACAUCCCAUUUGCUAUUUAAUAAUGUGCAUUAC-AAUUCUU ((((.(((((((((((.(((((.......)))))...))))(((.--...))).))))))).))))....................(((((((....)))).)))....-....... ( -20.70) >consensus AGAGCCAGGAUAUUGCAGCAUCUGCUGACGAUGUUUUGUAAGUCA___AAGACUUAACUUAUUAC_____________________UGCUAAUUAAUAAUGUGCAUUAA_AAUUCUA .....((((((((((((((....)))).))))))))))............................................................................... (-12.64 = -12.78 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:47 2006