| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 318,439 – 318,554 |
| Length | 115 |
| Max. P | 0.835163 |
| Location | 318,439 – 318,554 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.83 |
| Mean single sequence MFE | -31.48 |
| Consensus MFE | -24.45 |
| Energy contribution | -24.20 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.835163 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 318439 115 + 27905053 UAAUGACAAUGGACUGCGGACUAGGUUAUUAGUCACACCUUGAACUAAAUUGUACU----UUCAAUUGCAGCUGGAU-GAAGCUGCCCUGGAUCGAGGUACUUUGCUUUCACAUCACAAC ........(((((..(((((((((....))))))..(((((((.((((((((....----..)))))((((((....-..))))))..))).)))))))....)))..)).)))...... ( -32.90) >DroSim_CAF1 52166 115 + 1 UAAUGACAAUGGACUGCGGACUAGGUUGCUAGUCACACCUUGAACUAAAUUGUACU----UUCAAUUGCAGCUGGAU-CAAGCUGCCCUGGAUCGAGGUACUUUGCUUUCACAUCACAAC ........(((((..(((((((((....))))))..(((((((.((((((((....----..)))))((((((....-..))))))..))).)))))))....)))..)).)))...... ( -34.90) >DroEre_CAF1 55025 116 + 1 UAAUGACAAUUGGCUGCGGACUAGGUUAUUAGUCACAUCUUGAACAAAGUUGUACU----UUAAAUUGCAGCUGGAAGCAAGCUGCCCUGCAUCGAGGUACUUUGCUUUUACAUCACAAC ...(((.....(((((((((((((....))))))(((.(((.....))).)))...----......)))))))(((((((((.(((((......).)))).)))))))))...))).... ( -32.30) >DroYak_CAF1 56055 120 + 1 UAUAGAACAUGGGAUGCGAACUAGGUUAUUAGUCACAUCUUGAACUAAAUUGUACUAAAUUUUAAUUGCAGCUAGAAGCAAGCUGCCCUGGAUCGAGGUACUUUGCUUUUACAUCACAAC .........((.(((((((.(((((...(((((.(((.............)))))))).........((((((.......))))))))))).)))((((.....))))...)))).)).. ( -25.82) >consensus UAAUGACAAUGGACUGCGGACUAGGUUAUUAGUCACACCUUGAACUAAAUUGUACU____UUCAAUUGCAGCUGGAA_CAAGCUGCCCUGGAUCGAGGUACUUUGCUUUCACAUCACAAC ...........((..(((((((((....))))))..(((((((.((((((((..........)))))((((((.......))))))..))).)))))))....)))..)).......... (-24.45 = -24.20 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:32 2006