Locus 5399

Sequence ID 3R_DroMel_CAF1
Location 14,186,058 – 14,186,149
Length 91
Max. P 0.728708
window8792

overview

Window 2

Location 14,186,058 – 14,186,149
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 83.15
Mean single sequence MFE -23.90
Consensus MFE -16.82
Energy contribution -18.50
Covariance contribution 1.68
Combinations/Pair 1.16
Mean z-score -1.85
Structure conservation index 0.70
SVM decision value 0.42
SVM RNA-class probability 0.728708
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14186058 91 - 27905053
ACGAAAAAAAUGAGUGGAACGUGCGGCGUAUACGCAAUAUGGGCUUGUAAAAUCAAGCGCAAGAGUGGAAUAAGCGGCGUAUACGCAAUCU
.........................((((((((((....((.(((((......))))).))...((.......)).))))))))))..... ( -26.80)
>DroSec_CAF1 178166 91 - 1
ACGAAAGAAACGAGUGGAACGUGCGGCGUAUACGCAAUAUGGGCUUGUUAAAUCCAGCUCAAGAGUGUAAUAGGCGGCGUAUACGCAAUCU
.(....)..(((.......)))...((((((((((....((((((.(......).))))))....(((.....)))))))))))))..... ( -26.20)
>DroSim_CAF1 63493 91 - 1
ACGAAAGAAACGAGUGGAACGUGCGGCGUAUACGCAAUAUGGGCUUGUUAAAUCCAGCUCAAGAGUGUAAUAAGCGGCGUAUACGCAAUCU
.(....)..(((.......)))...((((((((((....((((((.(......).))))))...((.......)).))))))))))..... ( -26.10)
>DroEre_CAF1 55906 77 - 1
ACGCAA--AACGAGUGGCACGCGUGGCGUAUACGCAAUAUGUGCUUGUGAAAUCAAGCUUAAGAGUGAAAUAAGCGGC------------U
.(((..--..((...((((((..(.(((....))).)..))))))..))...(((..(....)..))).....)))..------------. ( -19.80)
>DroYak_CAF1 41347 89 - 1
ACGAAA--AUCGAGUGGAACGCGCGGCGUGCACGCAAUAUGUGCUUGUGAAAUUAAGCUUAAAAGUAAAAUAUGCGGCGUAUACGCAAUCU
.((...--..)).(((.....))).(((((.((((.......(((((......)))))......(((.....))).)))).)))))..... ( -20.60)
>consensus
ACGAAA_AAACGAGUGGAACGUGCGGCGUAUACGCAAUAUGGGCUUGUGAAAUCAAGCUCAAGAGUGAAAUAAGCGGCGUAUACGCAAUCU
.........................((((((((((....((.(((((......))))).))...((.......)).))))))))))..... (-16.82 = -18.50 +   1.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:46 2006