| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,182,851 – 14,182,941 |
| Length | 90 |
| Max. P | 0.687148 |
| Location | 14,182,851 – 14,182,941 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 79.84 |
| Mean single sequence MFE | -29.95 |
| Consensus MFE | -17.43 |
| Energy contribution | -16.60 |
| Covariance contribution | -0.83 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.687148 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14182851 90 - 27905053 -------CCCUUGCCACCGCAUCUUACCAAGGC-UUCCUUCCCU------------CCAAUUAUUAGCCAUAUGGCUGUCAGAGAUUCGUGG----CAGUUGCUGCGGCAGCUC -------....((((((.(.(((((...((((.-..))))....------------........(((((....)))))...))))).)))))----))(((((....))))).. ( -26.90) >DroSec_CAF1 175061 85 - 1 ------------GCCACCGCAUCUUACCAAGGC-UUCCGCCCCU------------CCAAUUAUUAGCCAUAUGGCUGUCAGAGAUUCGUGG----CAGUUGCUGCGGCAGCUC ------------(((((.(.(((((.....(((-....)))...------------........(((((....)))))...))))).)))))----)((((((....)))))). ( -29.60) >DroSim_CAF1 60342 90 - 1 -------CCCUGGCCACCGCAUCUUACCAAGGC-UUCCGCCCCU------------CCAAUUAUUAGCCAUAUGGCUGUCAGAGAUUCGUGG----CAGUUGCUGCGGCAGCUC -------.....(((((.(.(((((.....(((-....)))...------------........(((((....)))))...))))).)))))----)((((((....)))))). ( -29.60) >DroEre_CAF1 52888 88 - 1 -------CCCUGGGCGC-CCAUCUCACCAAGGC-CUCU-UCCCU------------CCAAUUAUUAGCCAUAUGGCUGUCAGAGAUUGGUGG----CAGUUGCUGCGGCAGCUC -------.....(.(((-(.(((((....(((.-....-..)))------------........(((((....)))))...))))).)))).----)((((((....)))))). ( -28.40) >DroYak_CAF1 38112 89 - 1 -------CCCUGGUCGCUCCAUCUUACCAAGGC-UUCU-UCCCU------------CCAAUUAUUAGCCAUAUGGCUGUCAGAGAUUGGUGG----CAGUUGCUGCGGCAGCUC -------((.((((...........)))).)).-....-..((.------------((((((..(((((....))))).....)))))).))----.((((((....)))))). ( -25.00) >DroAna_CAF1 51063 113 - 1 GAAGGCAGCCUUGGCGC-CAUGCUCACCACAGCCAUCCCCUCCUACAAUAUCAAUCCCCAUUAUUAGCCAUAUGGCUGUCAGUGAUUGGUGGCAGGCAGUUGCUGCGGCUGCUC ...((((((((((.(((-((...((((.((((((((......(((..(((...........))))))....))))))))..)))).))))).)))((((...))))))))))). ( -40.20) >consensus _______CCCUGGCCACCCCAUCUUACCAAGGC_UUCC_CCCCU____________CCAAUUAUUAGCCAUAUGGCUGUCAGAGAUUCGUGG____CAGUUGCUGCGGCAGCUC ..............(((.(.(((((.....((.......)).......................(((((....)))))...))))).))))......((((((....)))))). (-17.43 = -16.60 + -0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:44 2006