Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 14,180,904 – 14,181,143 |
Length | 239 |
Max. P | 0.999018 |
Location | 14,180,904 – 14,181,023 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 93.89 |
Mean single sequence MFE | -48.74 |
Consensus MFE | -46.56 |
Energy contribution | -46.92 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.06 |
Mean z-score | -2.03 |
Structure conservation index | 0.96 |
SVM decision value | 3.33 |
SVM RNA-class probability | 0.999018 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14180904 119 + 27905053 GGAGAGGAGCUUAGUUGGUAUAAUCGGCGCCUGACAGGCCAGCGUUUGGUAAUCGAUGGCCGUCGGCUCCACCGGCCGCGCCACUAUCAGACGCACCUGAGCUCCGGUCUGACGAAGAA (((..(((((((((.((((....((((...))))...))))((((((((((..((.((((((..(....)..))))))))....))))))))))..)))))))))..)))......... ( -50.10) >DroVir_CAF1 61893 119 + 1 GGAGAGGAGCUUAGUUGGUAUAAUGGGCGCAUGACUGGCCAGCGUAUGAUAAUCGAUGGCCGUCGGCUCCACCGGCCGUGCCACAAUCAGACGCACCUGAGCUCCGGUCUGACGAAGAA (((..(((((((((.((((....(((((((..(((.(((((.((.((....)))).))))))))((((.....))))))))).)).....)).)).)))))))))..)))......... ( -50.30) >DroGri_CAF1 49151 119 + 1 GGAGAGGAGCUUAGUUGGUAUAAUGGGCGCAUUGCUGGCAAGCGUAUUAUAAUCGAUGGCCGUUGGCUCCACGGGCCGCGCCACAAUCAGACGCACCUGAGCUCCGGUCUGACGAAGAA (((..(((((((((.((((....(((((((......(((...((.........))...)))...((((.....))))))))).)).....)).)).)))))))))..)))......... ( -45.80) >DroWil_CAF1 51519 119 + 1 GGAGAGGAGCUUAGUUGGUAUAAUAGGCGCAUGACUGGCCAGCGUUUGGUAAUCGAUGGCCGUCGGCUCCACGGGCCGUGCCACAAUCAGACGCACCUGAGCUCCGGUCUGACGAAGAA (((..(((((((((.((((......(((((..(((.(((((.((.........)).))))))))((((.....)))))))))........)).)).)))))))))..)))......... ( -49.64) >DroMoj_CAF1 65411 119 + 1 GGAGAGGAGCUUAGUUGGUAUAAUGGGCGCAUGACUGGCCAGCGUAUUGUAGUCGAUGGCCGUCGGCUCCACGGGCCGAGCCACAAUCAGACGCACCUGAGCUCCGGUCUGACGAAGAA (((..(((((((((.((((....(((((.(..(((.(((((.((.........)).))))))))((((.....))))).))).)).....)).)).)))))))))..)))......... ( -47.70) >DroPer_CAF1 62310 119 + 1 GGAGAGGAGCUUAGUUGGUAUAAUCGGCGCAUGACUGGCCAGCGUUUGGUAAUCGAUGGCAGUCGGCUCUACCGGCCGCGCCACUAUCAGACGCACCUGAGCUCCGGUCUGACGAAGAA (((..(((((((((...........(((.((....))))).((((((((((...(.((((.(.(((((.....)))))))))))))))))))))..)))))))))..)))......... ( -48.90) >consensus GGAGAGGAGCUUAGUUGGUAUAAUGGGCGCAUGACUGGCCAGCGUAUGGUAAUCGAUGGCCGUCGGCUCCACCGGCCGCGCCACAAUCAGACGCACCUGAGCUCCGGUCUGACGAAGAA (((..(((((((((.((((......(((((..(((.(((((.((.........)).))))))))((((.....)))))))))........)).)).)))))))))..)))......... (-46.56 = -46.92 + 0.36)
Location | 14,181,023 – 14,181,143 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.83 |
Mean single sequence MFE | -50.12 |
Consensus MFE | -36.51 |
Energy contribution | -35.98 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.37 |
Mean z-score | -2.19 |
Structure conservation index | 0.73 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.681831 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14181023 120 + 27905053 CUGUUGCCACCUGCUCCGAGCUGAAGCCCCGCAGAUUGACCUCGCCGAUCUGCAGCAGAUGAUCGCCCAGCUGCAGUCGGCCAUCCCGCUCGGCCACGCCCCCGGGCGUUAGGGCCUUGA .....(((.......((((((.((.(((..((((((((.......)))))))).((((.((......)).))))....)))..))..))))))..(((((....)))))...)))..... ( -45.70) >DroVir_CAF1 62012 120 + 1 CUGUGGCCACCUGCUCCGAGCUGAAGCCACGUAGAUUUACAUCGCCAAUCUGCAGCAGAUGAUCGCCCACCUGCAAACGCUGAUCACGCUCAGCGACGCCGCCCGGUGUCAGCGCCUUAA ....((((....(((..((((((((((...(((((((.........))))))).((((.((......)).))))....)))..))).)))))))((((((....)))))).).))).... ( -40.00) >DroGri_CAF1 49270 120 + 1 CUGUGGCCACUUGCUCCGAGCUGAAACCACGCAGAUUCACCUCGCCAAUCUGCAGCAGAUGAUCGCCCAACUGCAGGCGCUGAUCCCGCUCAGCGACGCCGCCCGGCGUCAGCGCCUUAA ..((((......((.....)).....))))(((((((.........))))))).((((.((......)).))))((((((((((.(((....(((....))).))).))))))))))... ( -46.20) >DroWil_CAF1 51638 120 + 1 CUGUGGCCACUUGCUCCGAGCUAAAGCCACGCAGAUUUACCUCGCCAAUCUGCAGCAGAUGGUCGCCCAUCUGUAGGCGGCCAUCGCGCUCCCCAACACCCCCAGGUGUUAGGGCUUUGA ..(((((.....((.....))....)))))(((((((.........)))))))(((.((((((((((........))))))))))..)))(((.((((((....)))))).)))...... ( -52.00) >DroAna_CAF1 49506 120 + 1 CUGUGGCCACCUGCUCCGAGCUGAAGCCCCGCAGAUUGACCUCCCCGAUCUGCAGUAGGUGGUCGCCCAGCUGCAGCCUCCCAUCUCGCUCGGCAACGCCGCCCGGCGUUAGGGCCUUGA ....(((((((((((....((....))...((((((((.......)))))))))))))))))))((((.((((.(((..........)))))))((((((....)))))).))))..... ( -56.30) >DroPer_CAF1 62429 120 + 1 CUGUGGCCACCUGCUCCGAGCUGAAGCCGCGCAGGUUGACCUCUCCGAUCUGCAGGAGGUGGUCGCCUAGCUGGAGGCGUCCGUCCCGCUCGGCGACGCCACCCGGCGUCAAGGCCUUGA ....((((((((((..((.((....)))).)))))).(((((((((........))))).))))(((.(((.((.(((....)))))))).)))((((((....))))))..)))).... ( -60.50) >consensus CUGUGGCCACCUGCUCCGAGCUGAAGCCACGCAGAUUGACCUCGCCAAUCUGCAGCAGAUGAUCGCCCAGCUGCAGGCGCCCAUCCCGCUCGGCGACGCCGCCCGGCGUCAGGGCCUUGA ....((((....(((..((((.........(((((((.........))))))).((((.((......)).)))).............)))))))((((((....))))))..)))).... (-36.51 = -35.98 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:40 2006