| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,166,801 – 14,166,891 |
| Length | 90 |
| Max. P | 0.836023 |
| Location | 14,166,801 – 14,166,891 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 75.83 |
| Mean single sequence MFE | -26.26 |
| Consensus MFE | -15.21 |
| Energy contribution | -15.54 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.836023 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14166801 90 + 27905053 AUUUCUCCGCGGAAAUCGGCAGCCCGUUCUGUGCAGAAUUUUCCCUUUGCUUCUGCUU----------------CCUUGAAAGCAUGUUGCAUAAUUUACGGGCUG ........((.(....).))(((((((..(((((((..(((((.....((....))..----------------....)))))....)))))))....))))))). ( -26.30) >DroSec_CAF1 158172 90 + 1 AUUUCUCCGCGAAAAUCGGCAGCCCGUUCUGUGCAGAAUUUUCCCUUCGCUGAAUUUU----------------CCUUGAGAGCAUGUUGCAUAAUUUACGGGCUG ......(((.......)))((((((((..(((((((((.......)))(((.......----------------.......)))....))))))....)))))))) ( -22.94) >DroSim_CAF1 43400 90 + 1 AUUUCUCCGCGAAAAUCGGCAGCCCGUUCUGUGCAGAAUUUUCCCUUCGCUGAAUUUU----------------CCUUGAAAGCAUGUUGCAUAAUUUACGGGCUG ......(((.......)))((((((((..(((((((((.......)))(((.......----------------.......)))....))))))....)))))))) ( -23.64) >DroEre_CAF1 36599 101 + 1 UUUGCUUCGCGGAAAUCGGCAGCUCGUUCUCAGCACAAAUUUCCCUUCGCUGCU-UUUCCUG----UGGCAGUGCCUUGAAAGCAUGUUGCAUAAUUUACGGGCUG ........((.(....).))(((((((.....(((((..((((....(((((((-.......----.)))))))....))))...)).))).......))))))). ( -27.90) >DroYak_CAF1 20191 85 + 1 UU--CUCCGCGGAAAUCGGCAGCUCGUUCUGUGCAGAAAUUUCCCUUCGCU--U-UUU----------------CCUUGAAAGCAUGUUGCAUAAUUUACGGGCUG ..--....((.(....).))(((((((..(((((((((.......)))(((--(-((.----------------....))))))....))))))....))))))). ( -25.30) >DroAna_CAF1 35558 94 + 1 -CUUUUCC----------GCGACUGGAUUUGUGCAGCAACUUCCCUGCGUUGCUUUUU-GCGAUGCUCGCGCUGCCUUAAAAGCAUGUUGCAUAAUUUACGCGCUG -.......----------(((....((.((((((((((........(((((((.....-)))))))....(((........))).)))))))))).))...))).. ( -31.50) >consensus AUUUCUCCGCGGAAAUCGGCAGCCCGUUCUGUGCAGAAAUUUCCCUUCGCUGCUUUUU________________CCUUGAAAGCAUGUUGCAUAAUUUACGGGCUG ...................((((((((..(((((((((.......)))(((..............................)))....))))))....)))))))) (-15.21 = -15.54 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:36 2006