| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,165,546 – 14,165,655 |
| Length | 109 |
| Max. P | 0.679027 |
| Location | 14,165,546 – 14,165,655 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 78.69 |
| Mean single sequence MFE | -28.32 |
| Consensus MFE | -13.08 |
| Energy contribution | -13.25 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.679027 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14165546 109 - 27905053 ----CAAGCCAAAUAGAAGGUAAAUUAAAUUUAUCUACGUCAAUGGUUUGUCUGGGCUGGGCUUGGCCCAAUUGCCGUUGAUAAGCCCGGCAAAUGGCAUUCAUGGCAGGCUA ----..((((.....(.((((((((...)))))))).)((((.(((..((((...((((((((((...((((....)))).))))))))))....)))).))))))).)))). ( -39.40) >DroPse_CAF1 44455 92 - 1 GAGACAAGCAAA--AGAAGGUAAAUUAAAUUUAUCUACGUCAAUGGCU---------------CGGC---AUUGCCUGUGAUAAACAGGGUAAAUAGCAUUCAUGCCA-GCUA ..(((...(...--.).((((((((...))))))))..)))..(((((---------------.(((---((..(((((.....)))))((.....))....))))))-)))) ( -22.60) >DroSec_CAF1 156934 109 - 1 ----CAAGCCAAAUAGAAGGUAAAUUAAAUUUAUCUACGUCAAUGGUUUGACUGGGCUUGGCUUGGCCCAAUUGCCGUUGAUAAACCCGGCAAAUGGCAUUCAUGGCAGGCUA ----((((((.....(.((((((((...)))))))).)(((((....)))))..))))))(((((.((((.((((((..........)))))).))).......).))))).. ( -35.81) >DroYak_CAF1 19025 109 - 1 ----CAAGCCAAAUAGAAGGUAAAUUAAAUUUAUCUACGUCAAUGGUUUGAUUGGGCUGGGCUUGGCCCAAUUGCCGUUGAUAAACCGGGAAAAUGGCAUUCAUGGCAGGCUA ----..((((.....(.((((((((...)))))))).)(((((((((..(((((((((......))))))))))))))))))...(((.(((.......))).)))..)))). ( -37.10) >DroAna_CAF1 34179 93 - 1 ----CUAGCAUAAUAGAAGGUAAAUUAAAUUUAUCUACGUCAAUGG---------------CUUGGCUCAAUUG-CGUUGAUAAACCCGGCAAAUAGCAUUCAAGGCAGGCUA ----.((((......((((((((((...))))))))..(((((...---------------.)))))))..(((-(.((((........((.....))..)))).)))))))) ( -18.30) >DroPer_CAF1 42670 92 - 1 UAGACAAGCAAA--AGAAGGUAAAUUAAAUUUAUCUACGUCAAUAGCU---------------CGGC---AUUGCCUUUGAUAAACAGGGUAAAUAGCAAUCAUGGCA-GCUA ......(((...--.(.((((((((...)))))))).)((((((.(((---------------....---.(((((((........)))))))..))).))..)))).-))). ( -16.70) >consensus ____CAAGCAAAAUAGAAGGUAAAUUAAAUUUAUCUACGUCAAUGGUU_____________CUUGGCCCAAUUGCCGUUGAUAAACCCGGCAAAUAGCAUUCAUGGCAGGCUA ......(((......(.((((((((...)))))))).)...........................(((...((((((..........))))))..)))...........))). (-13.08 = -13.25 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:33 2006