Locus 5390

Sequence ID 3R_DroMel_CAF1
Location 14,160,550 – 14,160,640
Length 90
Max. P 0.910103
window8778

overview

Window 8

Location 14,160,550 – 14,160,640
Length 90
Sequences 6
Columns 90
Reading direction forward
Mean pairwise identity 73.26
Mean single sequence MFE -25.61
Consensus MFE -16.67
Energy contribution -17.45
Covariance contribution 0.78
Combinations/Pair 1.12
Mean z-score -1.52
Structure conservation index 0.65
SVM decision value 1.07
SVM RNA-class probability 0.910103
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14160550 90 + 27905053
CAACCAUGAGCAUAUCGCACUGCCGUUGGGAUCCCAAGUCCAUUAUUUGGUAACUGGCAUUGUCAGGGCCGUUGCCUGUGGGUCUCAACA
.......(.(((........))))(((((((.((((............((((((.(((.........)))))))))..))))))))))). ( -27.14)
>DroSec_CAF1 151856 73 + 1
-------GAGCAUAUCGCACUGCCGUUGGGAUCCCAAGUCCAUUAUUUGGUAAC----------AGGACCGUUGCCUAAGGGUCUCAACA
-------(.(((........))))((((((((((.((((.....))))((((((----------......))))))...)))))))))). ( -22.20)
>DroSim_CAF1 37228 90 + 1
CAACCAUGAGCAUAUCGCACUGCCGUUGGGAUCCCAAGUCCAUUAUUUGGUAACUGGCAUUGUCAGGGCCGUUGCCUGUGGGUCUCAACA
.......(.(((........))))(((((((.((((............((((((.(((.........)))))))))..))))))))))). ( -27.14)
>DroEre_CAF1 30701 89 + 1
CAACCACGAGCAUAUCGCACUGCCGUUGGGAUCCCAAGCCCAUUAUUUGGUAACUGGCAUUGUCAGGGCCGUUUCCUG-GGGUCUCAACA
.......(.(((........))))((((((((((((...(((.....)))...(((((...)))))..........))-)))))))))). ( -28.40)
>DroYak_CAF1 13854 90 + 1
NNNNNNNNNNNNNNNNNNNNNNNCGUUGGGAUCCGAAGCCCAUUAUUUGGUAACUGGCAUUGUCAGGGCCGUUUCCUGUGGGUCUCAACA
........................(((((((((((..(((..((((...))))..))).....(((((.....)))))))))))))))). ( -25.20)
>DroAna_CAF1 29027 89 + 1
GUGCCUUGAAAAUAAUCCACUCCCGUUAGGAUGGCA-GCCCCUCCACGGGUAACUGCCAUUGUCAUGGCCAUUGCCAUUAGCCCUCAACA
........................((((((((((((-(.(((.....)))...)))))))....(((((....)))))....))).))). ( -23.60)
>consensus
CAACCAUGAGCAUAUCGCACUGCCGUUGGGAUCCCAAGCCCAUUAUUUGGUAACUGGCAUUGUCAGGGCCGUUGCCUGUGGGUCUCAACA
........................((((((((((.....(((.....)))...............((((....))))..)))))))))). (-16.67 = -17.45 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:32 2006