Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,995,247 – 1,995,362 |
Length | 115 |
Max. P | 0.605002 |
Location | 1,995,247 – 1,995,362 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 78.02 |
Mean single sequence MFE | -34.07 |
Consensus MFE | -19.48 |
Energy contribution | -19.27 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.23 |
Mean z-score | -1.64 |
Structure conservation index | 0.57 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.605002 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1995247 115 - 27905053 ----ACAAUCCAAUAGGACAGUGGGUACUUCUCACCGUGCUCCUUCUUCAAGGAAGUAGGCUUAUUGCCAAGCAAGCCCUUGACAUUAUCGAGAGUUUUCUGCACCAGCCAACUGUCAU ----............((((((((((((........))))))(((((....)))))..((((...(((..((.((((.(((((.....))))).)))).)))))..)))).)))))).. ( -33.10) >DroPse_CAF1 124461 119 - 1 CGGCUUAAUCCAGGAAUAUUGCGGAUACUUUUCGCUAUGCGCCUUUUUGAAGGUCGAUGGUUUUUUGCUGAAGUAACCCUUGACGUUGUCGAGGGUCUUUCGAACCAGCCAAUUGUCAU .(((((((...(((..(((.(((((.....))))).)))..)))..)))).((((((.((.....(((....)))(((((((((...))))))))))).))).))).)))......... ( -35.90) >DroSim_CAF1 149605 115 - 1 ----ACAAUCCAAUAGGACAGUGGGUACUUCUCACCGUGCGCCUUCUUAAAGGAAGUAGGCUUAUUGCCAAGUAAGCCCUUGACAUUUUCGAGAGUUUUCUGCACCAGCCAACUGUCAU ----............((((((.(((.......)))((((..(((((....)))))..((((((((....))))))))(((((.....)))))........))))......)))))).. ( -32.10) >DroEre_CAF1 147423 115 - 1 ----ACAAUCCAAUAGGACAGUGGGAACUUCUCAGCAUGCGCCUUCUUAAAGGAAGUGGGCUUCUUGCCAAACAAGCCCUUGACAUUUUCGAGAGUUUUGCGCACCAGCCAAUUGUCGU ----............(((((((((.....))).((.(((((...(((...((((((((((.....)))...(((....))).)))))))..)))....)))))...))..)))))).. ( -29.90) >DroYak_CAF1 151561 115 - 1 ----GCCAUCCAAUAGGGCAGUGGGAAUUUCUCACCGUGCGCCUUCUUAAAGGAAGUAGGCUUCUUUCCAAGUAAGCCCUUGACAUUAUCGAGAGUUUUGCGCACCAGCCAACUGUCAU ----............(((.(((((.....))))).(((((((((((....)))))..(((((((.....)).)))))(((((.....)))))......))))))..)))......... ( -34.10) >DroPer_CAF1 125641 119 - 1 CGGCUUAAUCCAGGAAUAUUGCGGAUACUUUUCGCUGUGCGCCUUUUUGAAGGUCGAUGGUUUUUUGCUGAAGUAACCCUUGACGUUGUCGAGGGUCUUUCGCACCAGCCAAUUGUCAU ((((((.....(((..(((.(((((.....))))).)))..)))......)))))).(((((...(((.((((..(((((((((...))))))))))))).)))..)))))........ ( -39.30) >consensus ____ACAAUCCAAUAGGACAGUGGGUACUUCUCACCGUGCGCCUUCUUAAAGGAAGUAGGCUUAUUGCCAAACAAGCCCUUGACAUUAUCGAGAGUUUUCCGCACCAGCCAACUGUCAU ................(((((((((.....))))).(((((((((....)))).....(((((.((....)).)))))(((((.....))))).......)))))........)))).. (-19.48 = -19.27 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:30 2006