Locus 5387

Sequence ID 3R_DroMel_CAF1
Location 14,151,646 – 14,151,748
Length 102
Max. P 0.802492
window8774

overview

Window 4

Location 14,151,646 – 14,151,748
Length 102
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 86.26
Mean single sequence MFE -37.57
Consensus MFE -25.95
Energy contribution -28.45
Covariance contribution 2.50
Combinations/Pair 1.06
Mean z-score -2.07
Structure conservation index 0.69
SVM decision value 0.62
SVM RNA-class probability 0.802492
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14151646 102 - 27905053
GGAUGGCCAGGGAACUGAAAGGUAAGUGCACAAA-------GUUCGGGACCUAUUCCCCGAGAGGGAACUGGGGAAGUGCACUCGAAGGAGCUGCCUUUUUGGGCUAUC
.(((((((((....))((((((((.((((((...-------.((((((........))))))((....))......))))))((....))..))))))))..))))))) ( -40.30)
>DroSec_CAF1 144588 102 - 1
GGAUGGCCAGGGAACUGAAAGGUAAGUGCCCAAA-------GUUCGAGACCUAUUCCCCGAGAGAGAACUGGGGAAGUGCACUCGGAGGAGCUGCCUUCUCGGACUAUC
((....)).(((.(((........))).)))..(-------((((((((....((((((.((......))))))))(.((((((....))).)))).)))))))))... ( -35.90)
>DroSim_CAF1 29022 102 - 1
GGAUGGCCAGGGAACUGAAAGGUAAGUGCCCAAA-------GUUCGAGACCUAUUCCCCGAGAGAGAACUGGGGAAGUGCACUCGGAGGAGCUGCCUUUUCGGGCUAUC
.(((((((((....))((((((((.((..((...-------.((((((.....((((((.((......)))))))).....)))))))).))))))))))..))))))) ( -38.60)
>DroEre_CAF1 23987 95 - 1
GGAUGGCCAGGGAACUGAAAGGUAAGUGCCCAAAGCCCAGAGUUCGGGACCUAUUCCCCGAGA--GAACUG------------CGCAGGAGCUGCCUUUUUGGGCUAUC
.(((((((((....))((((((((.((..((...((.(((..((((((........)))))).--...)))------------.)).)).))))))))))..))))))) ( -35.50)
>consensus
GGAUGGCCAGGGAACUGAAAGGUAAGUGCCCAAA_______GUUCGAGACCUAUUCCCCGAGAGAGAACUGGGGAAGUGCACUCGGAGGAGCUGCCUUUUCGGGCUAUC
.(((((((((....))((((((((.((.((............((((((.....((((((.((......)))))))).....)))))))).))))))))))..))))))) (-25.95 = -28.45 +   2.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:29 2006