Locus 5386

Sequence ID 3R_DroMel_CAF1
Location 14,150,481 – 14,150,574
Length 93
Max. P 0.714192
window8773

overview

Window 3

Location 14,150,481 – 14,150,574
Length 93
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 72.20
Mean single sequence MFE -18.58
Consensus MFE -1.87
Energy contribution -3.11
Covariance contribution 1.24
Combinations/Pair 1.09
Mean z-score -1.63
Structure conservation index 0.10
SVM decision value 0.38
SVM RNA-class probability 0.714192
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14150481 93 - 27905053
UAAAUUC------AAAUCACAGCUUAACUACAACUCAUGGUCACUUCUGGUUGGCAUCGAUUUUCGU-GCAACACGACAUACAAUUAGUUAGUUGCCAAC
.......------......(((((.(((((((((.((.((.....))))))))(((.((.....)))-))...............))))))))))..... ( -16.20)
>DroPse_CAF1 27891 84 - 1
UACAAUGGGAAAGGAUUCACACCCU------GGCUCAUGGUCACUUCUGGCUGGCAUCGAUUUUCAUUGCCAU------UCCCAUUAG----UGGCCAGC
....(((((..(((........)))------..)))))(((((((..(((.(((((..(.....)..))))).------..)))..))----)))))... ( -30.80)
>DroSec_CAF1 143387 89 - 1
UAAAUUC------AAAUCACAGCCCAACUACAACUCAUGGUCACUUCUGGUUGGCAUCGAUUUUCGU-GCAACACGACAUACAAUUAU----UUGGCAAC
.......------........(((......((((.((.((.....))))))))(((.((.....)))-))..................----..)))... ( -13.20)
>DroSim_CAF1 27819 89 - 1
GAAAUUC------AAAUCACAGCCCAACUACAACUCAUGGUCACUUCUGGUUGGCAUCGAUUUUCGU-GCAACACGACAUACAAUUAG----UUGGCAAC
.......------........(((.(((((((((.((.((.....))))))))(((.((.....)))-))...............)))----)))))... ( -17.40)
>DroEre_CAF1 22828 72 - 1
UAAAUGC------AAAU-----------------UCAUGGCCAUUUCUGGCCGCCAUCGAUUUUCGU-GCUACACGAUAUACAAUUAG----UUGCCAAC
.....((------((..-----------------....(((((....)))))...........((((-(...)))))...........----)))).... ( -15.30)
>consensus
UAAAUUC______AAAUCACAGCCCAACUACAACUCAUGGUCACUUCUGGUUGGCAUCGAUUUUCGU_GCAACACGACAUACAAUUAG____UUGCCAAC
.....................................((((.....(((((((............................)))))))......)))).. ( -1.87 =  -3.11 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:28 2006