Locus 5385

Sequence ID 3R_DroMel_CAF1
Location 14,149,499 – 14,149,590
Length 91
Max. P 0.995953
window8772

overview

Window 2

Location 14,149,499 – 14,149,590
Length 91
Sequences 3
Columns 91
Reading direction reverse
Mean pairwise identity 90.30
Mean single sequence MFE -29.87
Consensus MFE -29.22
Energy contribution -28.33
Covariance contribution -0.88
Combinations/Pair 1.12
Mean z-score -3.24
Structure conservation index 0.98
SVM decision value 2.63
SVM RNA-class probability 0.995953
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14149499 91 - 27905053
CUGGCUCUGUUGACGCUGCUGAUGCUGCUGAUGCUGUGUUGGCAGCUCGACUUUUUGCUAAAAAAAAAAAUUUGUUCCUUUGGGGUUUGUU
.((((...(((((.(((((..((((.((....)).))))..)))))))))).....))))........(((..(..((...))..)..))) ( -29.80)
>DroSec_CAF1 142401 86 - 1
CUGGCUCUGUUGACGCUGCUGAUGCUGCCA--GUUGUGUUGGCAGCUCGACUUUUUGCUAAAA---AAGAUUUAUUCCUUUGGGAUUUGUC
.((((...(((((.(((((..((((.....--...))))..)))))))))).....))))...---..(((..(((((...)))))..))) ( -29.50)
>DroSim_CAF1 26852 86 - 1
CUGGCUCUGUUGACGCUGCUGAUGCUGCCA--GUUGUGUUGGCAGCUCGACUUUUUGCUAAAA---AAGAUUUAUUCCUUUGGGAAUUGUC
.((((...(((((.(((((..((((.....--...))))..)))))))))).....))))...---..(((..(((((....))))).))) ( -30.30)
>consensus
CUGGCUCUGUUGACGCUGCUGAUGCUGCCA__GUUGUGUUGGCAGCUCGACUUUUUGCUAAAA___AAGAUUUAUUCCUUUGGGAUUUGUC
.((((...(((((.(((((..((((.((....)).))))..)))))))))).....))))........(((....(((....)))...))) (-29.22 = -28.33 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:27 2006