Locus 5384

Sequence ID 3R_DroMel_CAF1
Location 14,146,848 – 14,146,950
Length 102
Max. P 0.655625
window8771

overview

Window 1

Location 14,146,848 – 14,146,950
Length 102
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 70.98
Mean single sequence MFE -22.42
Consensus MFE -7.38
Energy contribution -8.10
Covariance contribution 0.72
Combinations/Pair 1.38
Mean z-score -1.77
Structure conservation index 0.33
SVM decision value 0.26
SVM RNA-class probability 0.655625
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14146848 102 - 27905053
AAAUAUUUGU---GU---UUGGAGCAUAAUUAUUUUCAUUGCAUUGUUCAGUUUGAAUUCAUUUU---UUCCGGUGCAUGAAGCUUACAUGCAUUGGCUUCCUGUCCAACG
(((((.((((---((---.....)))))).)))))........(((..(((..((....))....---..((((((((((.......))))))))))....)))..))).. ( -22.00)
>DroSec_CAF1 22380 95 - 1
AAAUAUUUGU---GU---UGCCAUCAUAAAUAUUUUCAUUGCAUUGUUCGGUUUGAAUUAAAUUUU--UUUCAGUGCAUGAAG--------CAUUGGCUUCCUGUCCAACG
((((((((((---(.---......)))))))))))....(((((((...((((((...))))))..--...))))))).((((--------(....))))).......... ( -19.40)
>DroSim_CAF1 23976 97 - 1
UAAUAUUUGU---GU---UGCCAUCAUAAAUAUUUUCAUUGCAUUGUUCGGUUUGAAUUCAUUUUUUCUUUCAGUGCAUGAAG--------CAUUGGCUUCCUGUCCAACG
.(((((((((---(.---......))))))))))(((((.((((((...((...(((.....)))..))..))))))))))).--------..(((((.....).)))).. ( -19.50)
>DroEre_CAF1 19110 102 - 1
AAAUAUUGGC---GU---UGGCAUCAUAAACAUUUCCACUGCAUUGUUCAGUUCGCAUGCAUUUU---UUCCGGUGCAUGAAGCUUACAUGCAUUGGCUUCCUGUCCAACG
.........(---((---(((........(((...(((.(((((.((..((((..((((((((..---....)))))))).)))).))))))).))).....))))))))) ( -26.10)
>DroWil_CAF1 20266 102 - 1
CAAUAUGUGAUGGGUCCCCGCCUU------CAUAUCCAUCGGCAUGUUCAGUAUAUACUGAAUUU---CAUAUAUGCAUGUGCCUUACAUGCAUUCGCUUUUUGUCCAUUG
..((((((((.((....))(((..------..........)))..(((((((....))))))).)---)))))))(((((((...)))))))................... ( -25.10)
>consensus
AAAUAUUUGU___GU___UGCCAUCAUAAAUAUUUUCAUUGCAUUGUUCAGUUUGAAUUCAUUUU___UUUCAGUGCAUGAAGCUUACAUGCAUUGGCUUCCUGUCCAACG
...........................................(((..(((...................((((((((((.......))))))))))....)))..))).. ( -7.38 =  -8.10 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:26 2006