Locus 5383

Sequence ID	3R_DroMel_CAF1
Location	14,142,987 – 14,143,102
Length	115
Max. P	0.909096

overview

Window 0

Location	14,142,987 – 14,143,102
Length	115
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	96.38
Mean single sequence MFE	-42.88
Consensus MFE	-38.70
Energy contribution	-38.32
Covariance contribution	-0.38
Combinations/Pair	1.07
Mean z-score	-2.24
Structure conservation index	0.90
SVM decision value	1.06
SVM RNA-class probability	0.909096
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14142987 115 - 27905053
AACCGUCGACAGGGAGGAGUACGGCUUGGAUUUGCAGCUGGAGAUGGAGUCUGAGCUGAGGCUGGAGGAACCGGCGGAAGCGGAACCGGAAACGGAAACGAACCAGGCAGCGGAU
..((((...............(((((..(((((.((........)))))))..))))).(.((((.....(((.(....))))..(((....))).......)))).).)))).. ( -42.30)
>DroSec_CAF1 15155 115 - 1
AACCGUCGACAGGGAGGAGUACGGCUUGGAUUUGCAGCUGGAGAUGGAGUCUGAGCUGAGGCUGGAGGCCCCGGUGGAAGCGGAACCGGAAACGGAAACGAACCAGGCAGCGGAU
..((((...............(((((..(((((.((........)))))))..))))).(.((((.....(((((.........)))))...((....))..)))).).)))).. ( -40.10)
>DroSim_CAF1 15828 115 - 1
AACCGUCGACAGGGAGGAGUACGGCUUGGAUUUGCAGCUGGAGAUGGAGUCUGAGCUGAGGCUGGAGGGCCCGGCGGAAGCGGAACCGAAAACGGAAACGAACCAGGCAGCGGAU
..((((...............(((((..(((((.((........)))))))..))))).(.((((.((..(((.(....))))..)).....((....))..)))).).)))).. ( -43.40)
>DroEre_CAF1 15536 115 - 1
AACCGUCGACAGGGAGGAGUACGGCUUGGAUUUGCAGCUGGAGAUGGAGUCUGAGUUGAGGCUGGAAGCUCCGGCGGCAGCGGAACCGGAAACGGAAACGAACCAGGCAGCGGAU
..((((((((........)).))((((((..((((.(((((((....(((((......))))).....))))))).))))((...(((....)))...))..)))))).)))).. ( -45.70)
>consensus
AACCGUCGACAGGGAGGAGUACGGCUUGGAUUUGCAGCUGGAGAUGGAGUCUGAGCUGAGGCUGGAGGCCCCGGCGGAAGCGGAACCGGAAACGGAAACGAACCAGGCAGCGGAU
..((((...............(((((..(((((.((........)))))))..))))).(.((((.....(((.(....))))..(((....))).......)))).).)))).. (-38.70 = -38.32 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:25 2006