Locus 5381

Sequence ID 3R_DroMel_CAF1
Location 14,139,465 – 14,139,555
Length 90
Max. P 0.788264
window8767

overview

Window 7

Location 14,139,465 – 14,139,555
Length 90
Sequences 4
Columns 90
Reading direction reverse
Mean pairwise identity 94.63
Mean single sequence MFE -22.63
Consensus MFE -21.24
Energy contribution -20.68
Covariance contribution -0.56
Combinations/Pair 1.15
Mean z-score -1.62
Structure conservation index 0.94
SVM decision value 0.58
SVM RNA-class probability 0.788264
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14139465 90 - 27905053
GUGGUCGUGAGUGGUAGUUUUGUGCUCAAUUCGUGUCUUUACGAGGCAUAUAAUUAUUAUAUGCUAGCUAUUCGAAUGGUAAAAUAAGUA
.(((.(((..(((((((((.((((((....(((((....))))))))))).)))))))))))))))(((((....))))).......... ( -20.00)
>DroSec_CAF1 11671 90 - 1
GUGGUCGUGAGUGGUAGUUGUGUGCUCAAUUCGUAUCUUUACGAGGCAUAUAAUUAUGAUAUGCCAGCCAUUCGAAUGGGAAAAUAAGUA
.(((.(((..((.(((((((((((((....(((((....)))))))))))))))))).)))))))).((((....))))........... ( -26.20)
>DroSim_CAF1 11975 90 - 1
GUGGUCGUGAGUGGUAGUUGUGUGCUCAAUUCGUGUCUUUACGAGGCAUAUAAUUAUGAUAUGCCAGCUAUUCGAAUGGGAAAAUAAGUA
.(((.(((..((.(((((((((((((....(((((....)))))))))))))))))).)))))))).((((....))))........... ( -23.60)
>DroEre_CAF1 12171 89 - 1
GUGGUCGUGAGUGGUAGUU-UCAGUUCAAUUCGUGUCUUUACGAGGCAUAUAAUUAUGAUAUGCCAGCUAUUCGAAUGGGAAAAUAAGUA
.......((((((((....-..........(((((....)))))(((((((.......))))))).))))))))................ ( -20.70)
>consensus
GUGGUCGUGAGUGGUAGUUGUGUGCUCAAUUCGUGUCUUUACGAGGCAUAUAAUUAUGAUAUGCCAGCUAUUCGAAUGGGAAAAUAAGUA
.......((((((((...............(((((....)))))(((((((.......))))))).))))))))................ (-21.24 = -20.68 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:22 2006