| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,129,702 – 14,129,800 |
| Length | 98 |
| Max. P | 0.579815 |
| Location | 14,129,702 – 14,129,800 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 77.11 |
| Mean single sequence MFE | -29.24 |
| Consensus MFE | -21.10 |
| Energy contribution | -20.63 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.32 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.579815 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14129702 98 + 27905053 AGCCAGUAGUGCAGCAGACUCUUGUCCACCGUGUACCGCUUGCGCUGCUUCACCUGCAGCAGGUUGUUGAUCAGGUCGAUGGCUG-GGGAAAACCAAAA------- (((((((((((((((.(((....)))....(....).)).)))))))).(((((((((((.....))))..))))).)))))))(-(......))....------- ( -33.30) >DroPse_CAF1 5958 98 + 1 AGCCAGUAGUGCAACAGGCUCUUGUCCACUGUGUAGCGCUUUCGCUGCUUCACCUGCAGCAGGUUGUUGAUCAGAUCAAUGGCUG-CGGAAUGAGAGAU------- .(((.((......)).)))(((..(((.....((((((....))))))..........((((.(..(((((...)))))..))))-))).)..)))...------- ( -29.50) >DroGri_CAF1 2404 99 + 1 AGCCAGUAAUGCAUUAGACUCUUGUCACAAGUAUAUCGCUUGCGCUGCUUCACUUGCAGCAGGUUGUUGAUGAGGUCAAUGGCUGCAA-----AUGG--AAUAGGU .(((....((((....(((....)))....)))).(((.(((((((((.......))))).(((..(((((...)))))..)))))))-----.)))--....))) ( -29.30) >DroWil_CAF1 4374 98 + 1 AGCCAAUAGUGUUGAAGACUCUUGUCUACCGUAUAACGUUUGCGUUGUUUCACCUGCAGCAGGUUGUUAAUCAGGUCAAUGGCUA-AAAAAUAAUGGAU------- (((((..........((((....))))((((.((((((....))))))..)(((((...))))).........)))...))))).-.............------- ( -21.70) >DroMoj_CAF1 2899 91 + 1 AGCCAGUAGUGCAUCAGGCUCUUGUCGCAGGUGUAGCGUUUGCGCUGCUUCACUUGCAGCAGAUUGUUGAUGAGGUCAAUGGCUA-AA-----AUGG--------- (((((......((((((.(..((((.((((((((((((....))))))...)))))).))))...))))))).......))))).-..-----....--------- ( -32.82) >DroPer_CAF1 2008 98 + 1 AGCCAGUAGUGCAACAGGCUCUUGUCCACUGUGUAGCGCUUUCGCUGCUUCACCUGCAGCAGGUUGUUGAUCAGAUCAAUGGCUA-CGGAAUGAGAGAU------- .((((.(((((..((((....)))).)))))))..)).((((((((((.......))))).(((..(((((...)))))..))).-......)))))..------- ( -28.80) >consensus AGCCAGUAGUGCAACAGACUCUUGUCCACCGUGUAGCGCUUGCGCUGCUUCACCUGCAGCAGGUUGUUGAUCAGGUCAAUGGCUA_AAGAAU_AUAGAU_______ .((.(((..((((...(((....))).....))))..))).))(((((.......))))).(((..(((((...)))))..)))...................... (-21.10 = -20.63 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:21 2006