Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,981,191 – 1,981,298 |
Length | 107 |
Max. P | 0.697867 |
Location | 1,981,191 – 1,981,298 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 67.50 |
Mean single sequence MFE | -17.07 |
Consensus MFE | -9.47 |
Energy contribution | -9.70 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.12 |
Mean z-score | -1.48 |
Structure conservation index | 0.56 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.697867 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1981191 107 - 27905053 UGAAAAAAAAUUGUUUGAUCUUCGGAUCUAACAAGAUCAGCACAAUAUAUAUUUACACCGCUCACAUUACUUAAUGCAACGAUUUCUGCAGACUUUACUAAAAUUUU ..........(((((.((((....)))).)))))........................................((((........))))................. ( -13.80) >DroEre_CAF1 141681 99 - 1 -UAUC------AUUUUGAUCUUGGGAACUUACGAGAUCAGCA-ACUAUAUCUUGCAACCGCUUACAUUACCCGAUGCAACGACCUCAGAAUACUUUUCUGAAAUGUU -((((------....((((((((........))))))))(((-(.......)))).................)))).((((...((((((.....))))))..)))) ( -20.60) >DroYak_CAF1 146224 99 - 1 -UAGUAAAGCUAACUUGAUCUUGGUAACUUACAAGAUCAUUAAAUUACGUCUUACAAACGCUUACAUUACCUGAUGCAACGACUU-------CUUGUCUAAAAUCUU -..((((.((.....((((((((........)))))))).........((.......)))))))).......(((.....(((..-------...)))....))).. ( -16.80) >consensus _UAAAAAA__UAAUUUGAUCUUGGGAACUUACAAGAUCAGCA_AAUAUAUCUUACAACCGCUUACAUUACCUGAUGCAACGACUUC_G_A_ACUUUUCUAAAAUCUU ...............((((((((........))))))))...................((.((.((((....)))).)))).......................... ( -9.47 = -9.70 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:29 2006