| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,122,127 – 14,122,258 |
| Length | 131 |
| Max. P | 0.995049 |
| Location | 14,122,127 – 14,122,227 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 83.64 |
| Mean single sequence MFE | -21.57 |
| Consensus MFE | -14.79 |
| Energy contribution | -14.85 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.807633 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14122127 100 + 27905053 AAAAUUCUUAUAGGGGAGACCGGAAAA-GGCGAAGAACAGGCAAAAGCCCAAAUGCAAAAACGGGUUUUACUUACUUAACCCAAGAUUUUGCAUAGUCUUC .....((((.(..((....))..).))-)).(((((...(((....)))...((((((((..(((((..........)))))....))))))))..))))) ( -25.20) >DroSec_CAF1 9283 100 + 1 GAAAUUCGUAUAAGGGAGACCGGAAAA-AGCGAAAAACAGGCAAAAGCACAAAUGCAAAAACGGGUUUCACUUACUUAACCCAAGAUUUUGCAUAGUCUUC ....(((((....((....))......-.)))))......(((((((((....)))......(((((..........)))))....))))))......... ( -22.00) >DroEre_CAF1 8996 98 + 1 GAAAUUCGUAUAAGGGAGACCGGAAAAAAGCGAAAAACAGGCAAAAGCCCAAAUGCAA-AACGGGUUUUACUUACUUAACCCAAGACUUUGCAUAGUCU-- ....(((((....((....))........))))).....(((....)))...((((((-(..(((((..........))))).....))))))).....-- ( -21.80) >DroYak_CAF1 12279 87 + 1 GAACUUUGUAUAAGGGAGACCAGAAAGAA--------------CAAGCCCAAAUGCAAAAACGGGUUUUACUUACUUAACCCAAGAUUUUUCGUAGUCUUC ..............((((((..((((((.--------------(..((......))......(((((..........)))))..).))))))...)))))) ( -17.30) >consensus GAAAUUCGUAUAAGGGAGACCGGAAAA_AGCGAAAAACAGGCAAAAGCCCAAAUGCAAAAACGGGUUUUACUUACUUAACCCAAGAUUUUGCAUAGUCUUC .............((....)).........................((......))......(((((..........)))))((((((......)))))). (-14.79 = -14.85 + 0.06)
| Location | 14,122,166 – 14,122,258 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 76.94 |
| Mean single sequence MFE | -17.05 |
| Consensus MFE | -10.99 |
| Energy contribution | -11.55 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.64 |
| SVM decision value | 2.54 |
| SVM RNA-class probability | 0.995049 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14122166 92 + 27905053 GCAAAAGCCCAAAUGCAAAAACGGGUUUUACUUACUUAACCCAAGAUUUUGCAUAGUCUUCACAAGUCUUCCUACUA-AUUUUUAUUUGCUAU (((((.......((((((((..(((((..........)))))....))))))))((.((.....)).))........-.......)))))... ( -16.10) >DroSec_CAF1 9322 93 + 1 GCAAAAGCACAAAUGCAAAAACGGGUUUCACUUACUUAACCCAAGAUUUUGCAUAGUCUUCACAAUUCUUCCUACUAAAUUUUUAUUUGCUAU (((((.......((((((((..(((((..........)))))....)))))))).((....))......................)))))... ( -15.30) >DroEre_CAF1 9036 74 + 1 GCAAAAGCCCAAAUGCAA-AACGGGUUUUACUUACUUAACCCAAGACUUUGCAUAGUCU-----------------U-UUUGCUUUUUACUGA (((((((..(..((((((-(..(((((..........))))).....))))))).)..)-----------------)-))))).......... ( -16.30) >DroYak_CAF1 12308 89 + 1 ---CAAGCCCAAAUGCAAAAACGGGUUUUACUUACUUAACCCAAGAUUUUUCGUAGUCUUCACAAGUCUGCUUGUUU-UUUGCCUUUUGCUGA ---..(((..(((.(((((((.(((((..........)))))((((((......)))))).(((((....)))))))-))))).))).))).. ( -20.50) >consensus GCAAAAGCCCAAAUGCAAAAACGGGUUUUACUUACUUAACCCAAGAUUUUGCAUAGUCUUCACAAGUCUUCCUACUA_AUUGCUAUUUGCUAA ..............(((((...(((((..........)))))((((((......)))))).........................)))))... (-10.99 = -11.55 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:17 2006