Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 14,120,840 – 14,120,939 |
Length | 99 |
Max. P | 0.584167 |
Location | 14,120,840 – 14,120,939 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 95.79 |
Mean single sequence MFE | -31.20 |
Consensus MFE | -29.61 |
Energy contribution | -29.42 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.07 |
Mean z-score | -1.45 |
Structure conservation index | 0.95 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584167 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14120840 99 - 27905053 AUUCAGAGGUUAAUGCUUUUCAUGGAGCGCUCAAGUGGCGCAAGUCGGAGACGACUAAUGGAGCACUUGUAGCCCUUUGUGAUGUGAUUGUGGUCUAGU ......((..((...(...(((..(((.(((((((((.(.(((((((....)))))..))..))))))).))).)))..)))...)....))..))... ( -32.70) >DroSec_CAF1 7886 99 - 1 AUUCAGAGGUUAAUGCUUUUCAUGGAGCGCUCAAGUGGCGCAAGUCGGAGACGACUAAUGGAGCACUUGUAGCUCUUUGUGAUGUGAUUGUGGUCUAGU ......((..((...(...(((..(((.(((((((((.(.(((((((....)))))..))..))))))).))).)))..)))...)....))..))... ( -33.20) >DroEre_CAF1 7917 99 - 1 AUUCAGAGGUUAAUGCUUUCCACGGAGCGCUCAAGUGGCGCAAGUCGGAGACGACUAAUGGAGCACUUGUGGCCCUUUGUGAUGUGAUUGUGGUCUAGU ..((((((((....))))).(((((((.(((((((((.(.(((((((....)))))..))..))))))).))).)))))))...)))............ ( -31.40) >DroYak_CAF1 9484 99 - 1 AUUCAGAGGAUAAUGCUUUUCAUGGAGCGCUCAAGUGGCGCAAGUCGAAGACGACUAAUGGAGCACUUGUGGCCCUUUGUGACGUGAUUUUGGUCUAGU ...((((((.....(((((....)))))(((((((((.(.(((((((....)))))..))..))))))).))))))))).(((.........))).... ( -27.50) >consensus AUUCAGAGGUUAAUGCUUUUCAUGGAGCGCUCAAGUGGCGCAAGUCGGAGACGACUAAUGGAGCACUUGUAGCCCUUUGUGAUGUGAUUGUGGUCUAGU ......((..((...(...((((((((.(((((((((.(.(((((((....)))))..))..))))))).))).))))))))...)....))..))... (-29.61 = -29.42 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:16 2006