Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 14,118,798 – 14,118,894 |
Length | 96 |
Max. P | 0.794612 |
Location | 14,118,798 – 14,118,894 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 73.88 |
Mean single sequence MFE | -21.02 |
Consensus MFE | -11.31 |
Energy contribution | -11.39 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.15 |
Mean z-score | -1.81 |
Structure conservation index | 0.54 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.794612 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14118798 96 - 27905053 AACAAGUUCUUUCU------------GGCGGAAACCACUUUUCACAUA-AAGAAGACAA-AAGUGCUUACAAAUAUUUGCGAACUGUUUUGUGUUCGCAGAAACAAUAAA------- ...((((.((((.(------------((.(....)).((((......)-)))....)))-))).)))).......(((((((((........))))))))).........------- ( -19.40) >DroSec_CAF1 5979 104 - 1 AACAAUUUCCUUUC------------AGCGGAAACCACUUUUCACAUUUGUGAAGACAC-AAGUGCUUACAAAUAUUUGCGAACUGUUUCGUGUUCGCCGAACCAAUAAACCUAUAA .....(((((....------------...)))))......(((.((((((((....)))-))))).............((((((........)))))).)))............... ( -20.50) >DroSim_CAF1 5909 97 - 1 AACCAUUUCCUUUC------------AGCGGAAACCACUUUUCACAUUUGUGAAGACAA-AAGUGAUUACAAAUAUUUGCGAACUGUUUCGUGUUCGCAGAAACAAUAAA------- .....(((((....------------...))))).((((((((((....)))).....)-)))))..........(((((((((........))))))))).........------- ( -23.10) >DroEre_CAF1 6010 102 - 1 AACAAGUUCCUUUGAGCAACAGCUCUGGCGGAAACGACUAUUCCCACA-------ACGAAAAGAGCUUACAAAUAUUUGCCAACUGUUU-GUGUUCGCAGAACCAAUAAA------- ...((((((.(((((((....))))(((((....)).)))........-------...))).)))))).......(((((.(((.....-..))).))))).........------- ( -21.90) >DroYak_CAF1 7517 100 - 1 -GCAUGUUCCUUUAAACUACAGCUCUGGCGGGAACGACCUUUCACACA-------ACCA-AAGAGUUUACAAAUAUUUGCGAACUGUUU-GCGUUCGCAGAACCAAUAAA------- -((.(((((((..........((....)))))))))...........(-------((((-((.((((..(((....)))..)))).)))-).))).))............------- ( -20.20) >consensus AACAAGUUCCUUUC____________GGCGGAAACCACUUUUCACAUA___GAAGACAA_AAGUGCUUACAAAUAUUUGCGAACUGUUU_GUGUUCGCAGAACCAAUAAA_______ ......((((...................))))..........................................(((((((((........)))))))))................ (-11.31 = -11.39 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:15 2006