Locus 5375

Sequence ID 3R_DroMel_CAF1
Location 14,118,424 – 14,118,524
Length 100
Max. P 0.990590
window8759

overview

Window 9

Location 14,118,424 – 14,118,524
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 92.50
Mean single sequence MFE -25.06
Consensus MFE -22.90
Energy contribution -22.90
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.76
Structure conservation index 0.91
SVM decision value 2.22
SVM RNA-class probability 0.990590
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14118424 100 - 27905053
GAUAGCUCAACAUUUUUUGCGACUUAAAAUUGUUUAUAAAAAUUGUUUUGUUUACGCAAACCAUUUCGUUGUUCUCGCGAGAGGCGACAUUGGAUUUGCU
...(((..((((.((((((.(((........)))..)))))).))))..)))...((((((((....(((((.(((....))))))))..))).))))). ( -24.50)
>DroSec_CAF1 5658 99 - 1
GGUCGCUCAACACUUUUUGCGACUUAAAAUUGUUUA-AAAAAUUGUUUUGUUUACGCAAACCAUUUCGUUGUUCUCGCGAGAGGCGACAUUGGAUGUGCU
((((((............))))))((((((.(((..-...))).)))))).....(((..(((....(((((.(((....))))))))..)))...))). ( -24.30)
>DroSim_CAF1 5545 100 - 1
GGUCGCUCAACACUUUUUGCGACUUAAAAUUGUUUAUAAAAAUUGUUUUGUUUACGCAAACCAUUUCGUUGUUCUCGUGAGAGGCGACAUUGGAUGUGCU
((((((............)))))).......((..((((((....))))))..))(((..(((....(((((.(((....))))))))..)))...))). ( -26.70)
>DroEre_CAF1 5660 100 - 1
GGAUGCUUGGCAUUUUUUGCGACUUAAAAUUGUUUAUAGAAAUUGUUUUGUUUACGCAAACCACUUCGUUGUUCUCGCGAGAGGCGACAUUGGAUUUGCU
(...((..((((.((((((.(((........)))..)))))).))))..))...)((((((((....(((((.(((....))))))))..))).))))). ( -25.10)
>DroYak_CAF1 7168 100 - 1
AGUUGCCUUACAUUUUUUGCGGCUUAAAAUUGUUUAUAGAAAUUGUUUUGUUUACGCAAACCAUUUCGUUGUUCUCGCGAGAGGCGACAUUGGAUUUGCU
.((((((((......((((((...((((((.((((....)))).))))))....)))))).....((((.......))))))))))))............ ( -24.70)
>consensus
GGUCGCUCAACAUUUUUUGCGACUUAAAAUUGUUUAUAAAAAUUGUUUUGUUUACGCAAACCAUUUCGUUGUUCUCGCGAGAGGCGACAUUGGAUUUGCU
....((.........((((((...((((((.((((....)))).))))))....))))))(((....(((((.(((....))))))))..)))....)). (-22.90 = -22.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:14 2006