Locus 5374

Sequence ID 3R_DroMel_CAF1
Location 14,116,990 – 14,117,083
Length 93
Max. P 0.500000
window8758

overview

Window 8

Location 14,116,990 – 14,117,083
Length 93
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 78.92
Mean single sequence MFE -32.17
Consensus MFE -18.65
Energy contribution -20.17
Covariance contribution 1.53
Combinations/Pair 1.11
Mean z-score -1.55
Structure conservation index 0.58
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14116990 93 - 27905053
CGGUGGACUCCAAAAGCUGACCAUCAAGCUGCCGCCACCGCCCAAGGGACCGCUGCAGUCG--------------CAGCACAAACGUACCACCGUCAGCAACAAUAA
(((((((((((...((((........))))...((....)).....)))..(((((....)--------------))))......)).))))))............. ( -27.10)
>DroSec_CAF1 4181 93 - 1
CGGUGGACUCCAGAAGCUGACCAUCAAGCUGCCGCCACCGCCCAAGGGUCCGCUGCAGUCG--------------CAGCACAAGCGGACCGCCGUCAGCAACAAUAA
((((((........((((........)))).((((....(((....)))..(((((....)--------------))))....)))).))))))............. ( -33.10)
>DroSim_CAF1 4121 93 - 1
CGGUGGACUCCAGAAGCUGACCAUCAAGCUACCGCCACCGCCCAAGGGUCCGCUGCAGUCG--------------CAGCACAAGCGGACCGCCGUCAGCAACAAUAA
((((((........((((........)))).((((....(((....)))..(((((....)--------------))))....)))).))))))............. ( -33.40)
>DroEre_CAF1 4193 102 - 1
CGGAGGACUCCAGAAGCUGACCAUCAAGCUGCCGCCACCGCCCAAGGGUCCGCUGCAGUCACAGGUUUC-----GCAGCACAAGCGGACCGCCGUCAGCAACAAUAA
.(((....)))....((((((......(((((.((....(((....)))..)).)))))....((((((-----((.......)))))..)))))))))........ ( -34.40)
>DroYak_CAF1 4437 102 - 1
AGGAGGACUCCAGAAGCUGACCAUCAAGCUGCCGCCGCCGCCCAAGGGUCCGCUGCAGUCGCAGGUUUC-----GCCGCACAAGCGGACCGCCGUCAGCAACAAUAA
.(((....)))....((((((......((.((....)).)).....((((((((...((.((.((....-----.)))))).))))))))...))))))........ ( -37.40)
>DroMoj_CAF1 1765 90 - 1
UGGUGGGCUACAGAAGCUGAGCAUUAAGCUGCCGCCGCCACCGAAGGGUCAAGUGCAGCCA--------AAUAGUUUUCACAAGAAGCCGGCAGG---------CAG
((.(.((((.....)))).).)).....(((((((((.((((....)))...(((.(((..--------....)))..))).....).)))).))---------))) ( -27.60)
>consensus
CGGUGGACUCCAGAAGCUGACCAUCAAGCUGCCGCCACCGCCCAAGGGUCCGCUGCAGUCG______________CAGCACAAGCGGACCGCCGUCAGCAACAAUAA
((((((........((((........))))....))))))......((((((((............................))))))))................. (-18.65 = -20.17 +   1.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:13 2006