Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,976,978 – 1,977,077 |
Length | 99 |
Max. P | 0.546657 |
Location | 1,976,978 – 1,977,077 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 86.60 |
Mean single sequence MFE | -29.26 |
Consensus MFE | -20.70 |
Energy contribution | -22.02 |
Covariance contribution | 1.32 |
Combinations/Pair | 1.10 |
Mean z-score | -1.67 |
Structure conservation index | 0.71 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.546657 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1976978 99 - 27905053 AAGGAAUAGUCAACCGUAGAAUAUCGUGUUUUGAAUGCUAAAACCUCUAUGCCAUGCCUGCACAGCU-CUUCCGCAUCGCCUUUGUCUGCGGUUGGCCUU ........((((((((((((.....((((.......((............)).......)))).((.-.....))..........))))))))))))... ( -25.74) >DroSec_CAF1 134445 100 - 1 AAGGAACAGUCAACCGUAGAAUAUCGUGUUUGGAAUGCUAAAACCUCUAUGCCAUGCCUGCACAGCGGCUUCCGCAUCGCCUUUGUCUGCGGUUGGCCUU ........((((((((((((.....((((..((...((............))....)).)))).((((...))))..........))))))))))))... ( -32.30) >DroSim_CAF1 139074 100 - 1 AAGCAACAGUCAACCGUAGAAUAUCGUGUUUGGAAUGCUAAAACCUCUAUGCCAUGCCUGCACAGCGGCUUCCGCAUCGCCUUUGUCUGCGGUUGGCCUU ........((((((((((((.....((((..((...((............))....)).)))).((((...))))..........))))))))))))... ( -32.30) >DroEre_CAF1 137578 89 - 1 GAGA--CAGUCAACCGUAGAAUAUCAUGCUUGGAAUGCUAAAACCUGUAUGUUAUG---------CGGCUUCCGCAUCGCCUUUGUCUGCGGUUGGCCUU ....--..((((((((((((....(((((..((..........)).)))))..(((---------(((...))))))........))))))))))))... ( -30.30) >DroYak_CAF1 140985 100 - 1 AAGACACAGUCAAACGUAGAAUAAUAUUUUGGGAAUGCUAAAACCUGUAAGUUAUGCCUGCAUAGCGGCUUCCGCAUCGCCUUUGUCUGCGGCUGGCCUU ........((((..((((((.........((((((.(((...........((((((....))))))))))))).)).........))))))..))))... ( -25.67) >consensus AAGAAACAGUCAACCGUAGAAUAUCGUGUUUGGAAUGCUAAAACCUCUAUGCCAUGCCUGCACAGCGGCUUCCGCAUCGCCUUUGUCUGCGGUUGGCCUU ........((((((((((((.....((((.......((............)).......)))).(((.....)))..........))))))))))))... (-20.70 = -22.02 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:28 2006