| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,101,168 – 14,101,285 |
| Length | 117 |
| Max. P | 0.950815 |
| Location | 14,101,168 – 14,101,285 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 80.41 |
| Mean single sequence MFE | -32.93 |
| Consensus MFE | -18.50 |
| Energy contribution | -18.90 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.51 |
| Structure conservation index | 0.56 |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.950815 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14101168 117 + 27905053 GAGCAGUGGGCGGUGUGGACGGGGCGGCUGAUUAAUAAUACGCAAGUGCCUAUGCACUGAUGUAUGUAUGUAGAUGAAAGCAAAGCAAUAGCACUGCAAAUACAGGGUGACCGCCGA (.((.(((.(((((((.......((.(((.(((.((((((((..(((((....)))))..)))))...))).)))...)))...))....)))))))...))).((....))))).. ( -35.80) >DroSec_CAF1 518 113 + 1 GAGCAGUGGGCGCUGUGGGCGGGGCGGCUGAUUAAUUAUACGCAAGUGCCUAUGCACUGAUGUC----UGUAGAUGAAAGCAAAGCAAAAGCCAUGCAAAUACAGGGUGAUCACAAA .....((((((.(((((.(((.(((.(((..(((.(((((.((((((((....)))))..))).----))))).)))......)))....))).)))...))))).))..))))... ( -33.50) >DroSim_CAF1 540 113 + 1 GAGCAGUGGGCGCUGUGGGCGGGGCGGCUGAUUAAUUAUACGCAAGUGCCUAUGCACUGAUGUA----UGUAGAUGAAAGCAAAGCAAUAGCACUGCAAAUACAGGGUGAUCACAAA .....((((((.(((((.((((....(((.......((((((..(((((....)))))..))))----))........)))...((....)).))))...))))).))..))))... ( -34.26) >DroEre_CAF1 723 99 + 1 GAGAAGUGGGCGGUGUGG--------GCUGAUUAAUAAUACACAAGUGCCUAUGCACUAAUGU--------AG-UGAAAGCAAAGCAAUAGCACUGCAAAUACAGGGUGACCG-AUA .....(((.(((((((..--------(((.........((((..(((((....)))))..)))--------)(-(....))..)))....)))))))...))).((....)).-... ( -32.80) >DroYak_CAF1 457 92 + 1 UAGAAGCGGGCAGUGUGG--------GCUGAUUAAUAAUACACAAGUGCCUAUGCACUGGUGU--------AGAUGAAAGCAGAGCAAUAGCACUGCAAAUACGGUAU--------- ......((.(((((((.(--------.(((........(((((.(((((....))))).))))--------)........)))..)....))))))).....))....--------- ( -28.29) >consensus GAGCAGUGGGCGGUGUGG_CGGGGCGGCUGAUUAAUAAUACGCAAGUGCCUAUGCACUGAUGU_____UGUAGAUGAAAGCAAAGCAAUAGCACUGCAAAUACAGGGUGACCACAAA .....(((.(((((((..........(((..........(((..(((((....)))))..)))...............))).........)))))))...))).............. (-18.50 = -18.90 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:05 2006