Locus 5366

Sequence ID 3R_DroMel_CAF1
Location 14,092,295 – 14,092,391
Length 96
Max. P 0.500000
window8745

overview

Window 5

Location 14,092,295 – 14,092,391
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 89.06
Mean single sequence MFE -17.40
Consensus MFE -11.30
Energy contribution -11.50
Covariance contribution 0.20
Combinations/Pair 1.16
Mean z-score -2.43
Structure conservation index 0.65
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14092295 96 + 27905053
ACCUGUCCAAAUUUAGAUAUUUAUACUUAUGAUGUAUCUACGAUGUAAUUUCUUAGCUUAUUGCUUCAUUAAUUAUGUCUAUCCCCACAUAGCCCU
..((((.......(((((((((((....)))).))))))).(((((((((....(((.....))).....))))))))).........)))).... ( -15.00)
>DroSec_CAF1 15046 96 + 1
ACCUGUCCAAAUUUAGAUGGUCAUACUUAUGAUGUAUCUACGAUGUAAUUUCGUAGCUUAUUGCUUCAUUAAUUAUGUCUAUACCCACAUAGCCCU
..((((.......(((((((((((....))))).)))))).(((((((((....(((.....))).....))))))))).........)))).... ( -16.80)
>DroSim_CAF1 16429 96 + 1
ACCUGUCCAAAUUCAGAUAUUCAUACUUAUGAUGUAUCUACGAUGUAAUUUCGUAGCUUAUUGCUUCAUUAAUUAUGUCUAUACCCACACAGCCCU
..((((........((((((((((....)))).))))))..(((((((((....(((.....))).....))))))))).........)))).... ( -18.10)
>DroEre_CAF1 15389 96 + 1
CCGUGGCCUAAUGUUGAUAUCCUUACCAAUUAUGUAUCUACGAUGUAAUUUCGUAGCUUAUUGCUUCAUUAAUUAUGUCUAUCCCCACAUAGCCCU
..((((......((.(((((.............))))).))(((((((((....(((.....))).....))))))))).....))))........ ( -17.52)
>DroYak_CAF1 27462 95 + 1
CC-UGUCCAAAUGUAGAUAUUUUUGCCUAUUAGAUAUCUGCGAUGUAAUUUCGUAGCUUAUUGCUUCAUUAAUUAUGUCUAUCCCCACAUAGCCCU
.(-(((......((((((((((.........))))))))))(((((((((....(((.....))).....))))))))).........)))).... ( -19.60)
>consensus
ACCUGUCCAAAUUUAGAUAUUCAUACUUAUGAUGUAUCUACGAUGUAAUUUCGUAGCUUAUUGCUUCAUUAAUUAUGUCUAUCCCCACAUAGCCCU
.............(((((((.............))))))).(((((((((....(((.....))).....)))))))))................. (-11.30 = -11.50 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:00 2006