Locus 5363

Sequence ID 3R_DroMel_CAF1
Location 14,082,576 – 14,082,674
Length 98
Max. P 0.647913
window8740

overview

Window 0

Location 14,082,576 – 14,082,674
Length 98
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 77.79
Mean single sequence MFE -24.50
Consensus MFE -13.09
Energy contribution -13.53
Covariance contribution 0.45
Combinations/Pair 1.32
Mean z-score -1.83
Structure conservation index 0.53
SVM decision value 0.24
SVM RNA-class probability 0.647913
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14082576 98 + 27905053
AAACGAGGCUCUGCACGGCGUUCAGAGCGGUUCUGUU---A-AAAAGAAAAAACGACGGCAAAGGCAAAUAAAAAAACUCAAGGCCAGGAUGCCAGAGUGCA
............(((((((((((...((.(((..(((---.-.........)))))).))...(((.................))).)))))))...)))). ( -22.73)
>DroSec_CAF1 5252 98 + 1
AAACGAGGCUCUGCACGGCGUUCAGAGUGGUUCUGUU---A-AGAAGAACAAACGACGGCAAGGGCAACUAAAAAAACACAAGGCCAGGAUGCCUGAGUGCA
.......((.((.((.(((((((...((.(((.((((---.-.....))))))).))(((..((....)).......(....)))).))))))))))).)). ( -27.20)
>DroSim_CAF1 6508 98 + 1
AAACGAGGCUCUGCACGGCGUUCAGAGUGGUUCUGUU---A-AGAAGAACAAACGACGGCAAGGGCAACUAAAAAAACACAAGGCCAGGAUGCCUGAGUGCA
.......((.((.((.(((((((...((.(((.((((---.-.....))))))).))(((..((....)).......(....)))).))))))))))).)). ( -27.20)
>DroEre_CAF1 5257 98 + 1
AAAUGAGGCUCUGCAUGGCGUUCAGAGCGGUUUUAUC---A-AAAAGAGCAAACGACGGCAAAGGCAAAUCAACAAACUCAAGGCCAGAAUGCCUGAGUUUA
...(((.((.((...((.((((....((..((((...---.-))))..))....)))).)).))))...)))..(((((((.(((......)))))))))). ( -25.20)
>DroYak_CAF1 5496 98 + 1
AAACGAGGCUCGGCAUGGCGUUCAGAGCGGUUUUAUC---A-AAAAGAGCAAUCGACGGCAAAGGCAAAUUAAAAAAUUUAAGGCUAGAAUGCCUGAGUUUA
.....((((((((((((.((((.(..((..((((...---.-))))..))..).)))).)...(((...((((.....)))).)))...))))).)))))). ( -23.60)
>DroAna_CAF1 5328 98 + 1
CAACCAA---CUUCAUGGUGUGCAGAAAGGUC-UGAUAUCAAAAAAGAAGCAGCGGAAGCUAAAUAAAAUAAAAAACCUUUCGGCUAAAAUGCCCGAUUUUA
..((((.---.....)))).....(((((((.-.....((......))...(((....)))..............)))))))(((......)))........ ( -21.10)
>consensus
AAACGAGGCUCUGCACGGCGUUCAGAGCGGUUCUGUU___A_AAAAGAACAAACGACGGCAAAGGCAAAUAAAAAAACUCAAGGCCAGAAUGCCUGAGUGCA
.......((((.....(((((((......(((((...........))))).......(((.......................))).))))))).))))... (-13.09 = -13.53 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:56 2006